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<prev • 215 results • page 1 of 8 • next >
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Differences in hit number between Pfam, HMMER and searching UniProt with domain name
protein database alignment uniprot pfam hmmer written 24 days ago by skvaller • 0
2
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1
answer
147
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5 follow
1
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Ensembl ID conversion - other than Uniprot
ensembl uniprot rna-seq id conversion written 27 days ago by NS • 10 • updated 26 days ago by Alex Reynolds ♦ 26k
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80
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How to query taxonomy ID using protein accession ID in NCBI or Uniprot?
ncbi taxonomy uniprot written 27 days ago by johnnytam100 • 90
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3.2k
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5 follow
4
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Different Protein Go Annotation Results Depending On Their Source: Uniprot, Amigo, Quickgo...
gene annotation uniprot written 7.8 years ago by Pablo Pareja • 1.6k • updated 5 weeks ago by Neo • 0
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News: UniProtKB: Standardization of 'Catalytic activity' annotations
news uniprot written 10 weeks ago by Elisabeth Gasteiger • 1.5k
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News: UniProtKB: Change of the annotation topic 'Enzyme regulation' to 'Activity regulation', not before Sep 12th, 2018
news uniprot written 6 months ago by Elisabeth Gasteiger • 1.5k
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News: Programmatic access uniprot.org: Deprecation of legacy REST URLs /batch and /mapping - please replace by /uploadlists
news uniprot written 6 months ago by Elisabeth Gasteiger • 1.5k
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240
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Get all chemical compounds interacted with target
interaction cid uniprot written 4 months ago by emanismail.92 • 0 • updated 4 months ago by Denise - Open Targets • 4.7k
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2
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359
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2
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Extracting Sub-cellular location from Uniprot into tabular format
swissprot uniprot parsing written 5 months ago by Michael Dondrup ♦ 45k • updated 5 months ago by Elisabeth Gasteiger • 1.5k
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1
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327
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1
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News: uniprot.org is moving from HTTP to HTTPS
database protein news uniprot written 11 months ago by Elisabeth Gasteiger • 1.5k
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172
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Bioconductor: Retrieve Uniprot Informations with only UniprotKB
bioconductor uniprot written 5 months ago by Benni • 20
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134
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Federated query gives: "Usupported combination of subqueries and service invocations"
sparql linked-data uniprot written 5 months ago by cleb • 30
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208
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How to connect uniprot and rhea?
rhea semantic-web sparql uniprot written 6 months ago by cleb • 30
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1
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336
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1
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How to retrieve EC numbers and KOs for proteins of several taxons?
sparql uniprot semantic-web written 6 months ago by cleb • 30 • updated 6 months ago by me • 690
2
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0
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239
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0
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Query UniProt database with Mnemonic identifier
R uniprot written 6 months ago by camachofrancine • 90
2
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2
answers
398
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2
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Creation of UniProt Pseudo-metagenome
genome protein uniprot rna-seq written 7 months ago by Faust • 0 • updated 6 months ago by Elisabeth Gasteiger • 1.5k
2
votes
1
answer
277
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1
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Gene enrichment analysis
gene_enrichment david blast2go uniprot written 7 months ago by Ambika • 20 • updated 7 months ago by Buffo • 1.2k
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Tool: Proteome-pI - Proteome Isoelectric Point Database
proteome isoelectric point tool database uniprot nr written 8 months ago by Lukasz Kozlowski • 0
1
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1
answer
784
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1
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How to parse a dat file into FASTA format?
fasta dat file biopython uniprot written 8 months ago by yuevine • 0 • updated 8 months ago by Elisabeth Gasteiger • 1.5k
4
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1
answer
480
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1
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How to specify columns in Uniprot batch query from Uniprot IDs?
perl proteinid uniprot batch written 8 months ago by Solowars • 40 • updated 8 months ago by Elisabeth Gasteiger • 1.5k
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1
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496
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1
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Importing Uniprot into BioSQL using BioPython takes years (nearly literally!)
biopython biosql uniprot written 10 months ago by Jan • 20
3
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1
answer
482
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1
answer
UniProt SPARQL: retrieving proteins of a complete proteome (Escherichia coli K12)
rdf protein sparql uniprot proteome written 10 months ago by amorgat • 10 • updated 10 months ago by me • 690
1
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2
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410
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How to get a list of all human protein targets and their target class? UniProt or ChEMBL?
chembl uniprot target written 10 months ago by Leanna • 0
6
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2
answers
650
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2
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Batch download UniProt proteomes with list of proteome IDs
proteome uniprot script written 11 months ago by JMac • 10 • updated 11 months ago by Elisabeth Gasteiger • 1.5k
1
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0
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358
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SIFTS (uniprot <-> pdb chain) has SP_END < SP_BEG for some mappings
pdb sifts protein mapping uniprot written 11 months ago by mtscales • 20
3
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1
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445
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1
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Cross-reference with PDB database
pdb protein uniprot sequencing written 11 months ago by adirsommer • 10 • updated 11 months ago by Elisabeth Gasteiger • 1.5k
2
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1
answer
405
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1
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How to not get an overcounting of proteins sequences in database ?
fasta protein uniprot written 11 months ago by yayuciara • 0 • updated 11 months ago by Elisabeth Gasteiger • 1.5k
2
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1
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395
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1
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Get gene ids from probe ids (my idea is right or wrong)
probe david uniprot blast entrez written 12 months ago by The Last Word • 170
1
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News: UniProtKB FASTA headers: Addition of NCBI taxonomy identifier
fasta news taxonomy uniprot swiss-prot written 11 months ago by Elisabeth Gasteiger • 1.5k • updated 11 months ago by genomax ♦ 59k
2
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1
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633
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1
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Accessing UNIPROT using REST API
python programmatic access rest api uniprot written 12 months ago by Natasha • 30 • updated 12 months ago by Elisabeth Gasteiger • 1.5k
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