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Comment: Comment: Hypergeometric test equivalent for difference between two sets of genes list ins
3.0 years ago by Ivan ▴ 60
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2
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1.1k
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Hypergeometric test equivalent for difference between two sets of genes list instead of intersection
hypergeometric test
3.0 years ago by Ivan ▴ 60
0
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1
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1.2k
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Comment: Comment: Snakemake wildcards overwriting one another
3.1 years ago by Ivan ▴ 60
1
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3
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1.2k
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Snakemake wildcards overwriting one another
snakemake
updated 3.1 years ago by ▴ 540 • written 3.1 years ago by ▴ 60
0
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0
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882
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Comment: Comment: Can read fragment size be shorter than read length size?
3.1 years ago by Ivan ▴ 60
2
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2
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882
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Can read fragment size be shorter than read length size?
NGS samtools
updated 2.2 years ago by 45k • written 3.1 years ago by ▴ 60
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0
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2.8k
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Comment: Comment: Pass a python dictionary as a snakemake variable (input and output)
3.1 years ago by Ivan ▴ 60
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2.8k
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Comment: Comment: Pass a python dictionary as a snakemake variable (input and output)
3.1 years ago by Ivan ▴ 60
0
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4
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2.8k
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Pass a python dictionary as a snakemake variable (input and output)
python snakemake widlcards
3.1 years ago by Ivan ▴ 60
4
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2
replies
920
views
Extract all regions in a genome that are not assembly gaps from a FASTA file quickly
fasta
3.2 years ago by Ivan ▴ 60
2
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0
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920
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Answer: Answer: Extract all regions in a genome that are not assembly gaps from a FASTA file qui
3.2 years ago by Ivan ▴ 60
1
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2
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1.2k
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Determining which chromosome is the sex chromosome from FASTA file
sex chromosomes genome reference fasta
updated 3.4 years ago by 21k • written 3.4 years ago by ▴ 60
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1
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2.4k
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Answer: Answer: How to automate bwa, samtools, bcftools upto variant calling steps without savin
3.5 years ago by Ivan ▴ 60
0
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1
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1.6k
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Align split-reads with bowtie-2 using snakemake
snakemake bowtie2
3.6 years ago by Ivan ▴ 60
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0
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1.6k
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Answer: Answer: Align split-reads with bowtie-2 using snakemake
3.6 years ago by Ivan ▴ 60
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0
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2.2k
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Comment: Comment: Using snakemake to download split-reads by SRA number
3.6 years ago by Ivan ▴ 60
4
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2
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2.2k
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Using snakemake to download split-reads by SRA number
snakemake sratoolkit
3.6 years ago by Ivan ▴ 60
0
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1
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2.7k
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Comment: Comment: Executing snakemake array jobs on cluster
3.6 years ago by Ivan ▴ 60
5
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3
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2.7k
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Executing snakemake array jobs on cluster
snakemake cluster
updated 3.6 years ago by 15k • written 3.6 years ago by ▴ 60
2
votes
2
replies
1.4k
views
Extract only locations of annotated genes from a reference genome
annotation RefSeq coding-genes
updated 3.7 years ago by ▴ 800 • written 3.7 years ago by ▴ 60
1
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3
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2.2k
views
Problem with installing CNVnator
centOS samtools cnvnator linux
3.7 years ago by Ivan ▴ 60
1
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0
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2.2k
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Answer: Answer: Problem with installing CNVnator
3.7 years ago by Ivan ▴ 60
0
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0
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2.2k
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Comment: Comment: Problem with installing CNVnator
3.7 years ago by Ivan ▴ 60
0
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0
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874
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Problem with using flagstat after bowtie2 alignment
bowtie2 samtools flagstat
3.7 years ago by Ivan ▴ 60
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1
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1.7k
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Comment: Comment: Problem with bowtie2 alignment - libtbb.so.2
3.8 years ago by Ivan ▴ 60
1
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3
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1.7k
views
Problem with bowtie2 alignment - libtbb.so.2
shell bowtie2 samtools
updated 3.2 years ago by 45k • written 3.8 years ago by ▴ 60
2
votes
1
reply
1.0k
views
Connect SRA Bio Sample to Run
SRA sratoolkit
updated 3.8 years ago by ★ 3.9k • written 3.8 years ago by ▴ 60
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