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0
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703
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Comment:
Comment: Hypergeometric test equivalent for difference between two sets of genes list ins
19 months ago by
Ivan
▴ 60
0
votes
2
replies
703
views
Hypergeometric test equivalent for difference between two sets of genes list instead of intersection
hypergeometric
test
19 months ago by
Ivan
▴ 60
0
votes
1
reply
827
views
Comment:
Comment: Snakemake wildcards overwriting one another
21 months ago by
Ivan
▴ 60
1
vote
3
replies
827
views
Snakemake wildcards overwriting one another
snakemake
updated 21 months ago by
raphael.B
▴ 520 • written 21 months ago by
Ivan
▴ 60
0
votes
0
replies
577
views
Comment:
Comment: Can read fragment size be shorter than read length size?
21 months ago by
Ivan
▴ 60
2
votes
2
replies
577
views
Can read fragment size be shorter than read length size?
NGS
samtools
updated 10 months ago by
Ram
43k • written 21 months ago by
Ivan
▴ 60
0
votes
0
replies
2.0k
views
Comment:
Comment: Pass a python dictionary as a snakemake variable (input and output)
21 months ago by
Ivan
▴ 60
0
votes
1
reply
2.0k
views
Comment:
Comment: Pass a python dictionary as a snakemake variable (input and output)
21 months ago by
Ivan
▴ 60
0
votes
4
replies
2.0k
views
Pass a python dictionary as a snakemake variable (input and output)
python
snakemake
widlcards
21 months ago by
Ivan
▴ 60
4
votes
2
replies
597
views
Extract all regions in a genome that are not assembly gaps from a FASTA file quickly
fasta
22 months ago by
Ivan
▴ 60
2
votes
0
replies
597
views
Answer:
Answer: Extract all regions in a genome that are not assembly gaps from a FASTA file qui
22 months ago by
Ivan
▴ 60
1
vote
2
replies
673
views
Determining which chromosome is the sex chromosome from FASTA file
sex
chromosomes
genome
reference
fasta
updated 2.0 years ago by
cpad0112
21k • written 2.0 years ago by
Ivan
▴ 60
0
votes
1
reply
1.4k
views
Answer:
Answer: How to automate bwa, samtools, bcftools upto variant calling steps without savin
2.1 years ago by
Ivan
▴ 60
0
votes
1
reply
1.2k
views
Align split-reads with bowtie-2 using snakemake
snakemake
bowtie2
2.2 years ago by
Ivan
▴ 60
0
votes
0
replies
1.2k
views
Answer:
Answer: Align split-reads with bowtie-2 using snakemake
2.2 years ago by
Ivan
▴ 60
0
votes
0
replies
1.5k
views
Comment:
Comment: Using snakemake to download split-reads by SRA number
2.2 years ago by
Ivan
▴ 60
4
votes
2
replies
1.5k
views
Using snakemake to download split-reads by SRA number
snakemake
sratoolkit
2.2 years ago by
Ivan
▴ 60
0
votes
1
reply
1.8k
views
Comment:
Comment: Executing snakemake array jobs on cluster
2.2 years ago by
Ivan
▴ 60
4
votes
3
replies
1.8k
views
Executing snakemake array jobs on cluster
snakemake
cluster
updated 2.2 years ago by
dariober
14k • written 2.2 years ago by
Ivan
▴ 60
2
votes
2
replies
927
views
Extract only locations of annotated genes from a reference genome
annotation
RefSeq
coding-genes
updated 2.3 years ago by
MirianT_NCBI
▴ 720 • written 2.3 years ago by
Ivan
▴ 60
1
vote
3
replies
1.5k
views
Problem with installing CNVnator
centOS
samtools
cnvnator
linux
2.4 years ago by
Ivan
▴ 60
1
vote
0
replies
1.5k
views
Answer:
Answer: Problem with installing CNVnator
2.4 years ago by
Ivan
▴ 60
0
votes
0
replies
1.5k
views
Comment:
Comment: Problem with installing CNVnator
2.4 years ago by
Ivan
▴ 60
0
votes
0
replies
622
views
Problem with using flagstat after bowtie2 alignment
bowtie2
samtools
flagstat
2.4 years ago by
Ivan
▴ 60
0
votes
1
reply
1.2k
views
Comment:
Comment: Problem with bowtie2 alignment - libtbb.so.2
2.4 years ago by
Ivan
▴ 60
1
vote
3
replies
1.2k
views
Problem with bowtie2 alignment - libtbb.so.2
shell
bowtie2
samtools
updated 22 months ago by
Ram
43k • written 2.4 years ago by
Ivan
▴ 60
2
votes
1
reply
661
views
Connect SRA Bio Sample to Run
SRA
sratoolkit
updated 2.4 years ago by
vkkodali_ncbi
★ 3.7k • written 2.4 years ago by
Ivan
▴ 60
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