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Hypergeometric test equivalent for difference between two sets of genes list instead of intersection
hypergeometric test
20 months ago by Ivan ▴ 60
1
vote
3
replies
839
views
Snakemake wildcards overwriting one another
snakemake
updated 21 months ago by ▴ 520 • written 21 months ago by ▴ 60
2
votes
2
replies
584
views
Can read fragment size be shorter than read length size?
NGS samtools
updated 10 months ago by 43k • written 21 months ago by ▴ 60
0
votes
4
replies
2.0k
views
Pass a python dictionary as a snakemake variable (input and output)
python snakemake widlcards
21 months ago by Ivan ▴ 60
4
votes
2
replies
602
views
Extract all regions in a genome that are not assembly gaps from a FASTA file quickly
fasta
22 months ago by Ivan ▴ 60
1
vote
2
replies
692
views
Determining which chromosome is the sex chromosome from FASTA file
sex chromosomes genome reference fasta
updated 2.0 years ago by 21k • written 2.0 years ago by ▴ 60
0
votes
1
reply
1.2k
views
Align split-reads with bowtie-2 using snakemake
snakemake bowtie2
2.2 years ago by Ivan ▴ 60
4
votes
2
replies
1.5k
views
Using snakemake to download split-reads by SRA number
snakemake sratoolkit
2.2 years ago by Ivan ▴ 60
4
votes
3
replies
1.8k
views
Executing snakemake array jobs on cluster
snakemake cluster
updated 2.3 years ago by 14k • written 2.3 years ago by ▴ 60
2
votes
2
replies
939
views
Extract only locations of annotated genes from a reference genome
annotation RefSeq coding-genes
updated 2.3 years ago by ▴ 720 • written 2.4 years ago by ▴ 60
1
vote
3
replies
1.6k
views
Problem with installing CNVnator
centOS samtools cnvnator linux
2.4 years ago by Ivan ▴ 60
0
votes
0
replies
630
views
Problem with using flagstat after bowtie2 alignment
bowtie2 samtools flagstat
2.4 years ago by Ivan ▴ 60
1
vote
3
replies
1.2k
views
Problem with bowtie2 alignment - libtbb.so.2
shell bowtie2 samtools
updated 22 months ago by 43k • written 2.4 years ago by ▴ 60
2
votes
1
reply
670
views
Connect SRA Bio Sample to Run
SRA sratoolkit
updated 2.5 years ago by ★ 3.7k • written 2.5 years ago by ▴ 60
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