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from phased SNPs to haplotype blocks (or phase sets)
eagle2 statistical phasing haplotype block
updated 4.5 years ago by ▴ 210 • written 5.9 years ago by ▴ 500
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3
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13k
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Answer: A: problems in hg19 and b37 compatibility
updated 5.7 years ago by 45k • written 11.3 years ago by ▴ 500
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1
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5.1k
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Comment: C: How to compute MAPQ distribution with Rsamtools
updated 5.7 years ago by 45k • written 11.4 years ago by ▴ 500
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0
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9.6k
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Comment: C: EOF marker is absent in merged bam file
updated 5.9 years ago by 45k • written 10.1 years ago by ▴ 500
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0
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4.5k
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Answer: A: miRdeep2 mapper error
updated 5.9 years ago by 45k • written 10.3 years ago by ▴ 500
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1
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3.2k
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Comment: C: miRanalyzer run error
updated 5.9 years ago by 45k • written 10.3 years ago by ▴ 500
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1
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10k
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Comment: C: How to convert file from one format to another one using script?
updated 5.9 years ago by 45k • written 10.3 years ago by ▴ 500
2
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1
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16k
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Comment: Comment: boxplot with a for loop
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
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0
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2.2k
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Answer: A: Deblock a VCF
updated 5.9 years ago by 45k • written 10.3 years ago by ▴ 500
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0
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1.8k
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Comment: C: Problems wth cnvkit scatter for genes
6.5 years ago by Nicola Casiraghi ▴ 500
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1
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2.6k
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Get the read count per genomic bin for each 10x barcode (10x Genomics Single Cell Gene Expression protocol)
RNA-Seq 10x genomics cell ranger bam read count
6.5 years ago by Nicola Casiraghi ▴ 500
9
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6
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5.6k
views
BICseq R package problem
BICseq CNV R WGS
updated 3.0 years ago by 45k • written 11.2 years ago by ▴ 500
1
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0
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2.2k
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Job: A postdoctoral position is available at CIBIO, University of Trento, Trento, Italy
epigenetics genomics transcriptomics
updated 2.4 years ago by 45k • written 8.5 years ago by ▴ 500
6
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8
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3.8k
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From genomic coordinate to Reference base
genome
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 500
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0
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2.5k
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Comment: C: Number of SNPs by target sequencing
9.3 years ago by Nicola Casiraghi ▴ 500
2
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1
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2.5k
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Answer: A: Number of SNPs by target sequencing
9.3 years ago by Nicola Casiraghi ▴ 500
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0
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2.1k
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Comment: C: How to extract only probes that exist on 2 different platform?
9.3 years ago by Nicola Casiraghi ▴ 500
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0
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3.0k
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Answer: A: R - Count number of Samples with mutation per gene
9.3 years ago by Nicola Casiraghi ▴ 500
1
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0
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2.1k
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Comment: C: compute count of position coverage with bedtools
9.3 years ago by Nicola Casiraghi ▴ 500
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0
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4.2k
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Answer: Answer: Plotting Coverage in R
updated 3.0 years ago by 45k • written 9.4 years ago by ▴ 500
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0
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5.3k
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Comment: C: Best method to call SNPs/genotype many bam files from only a defined list of var
9.4 years ago by Nicola Casiraghi ▴ 500
4
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1
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103k
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Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
9.5 years ago by Nicola Casiraghi ▴ 500
5
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3
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3.2k
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manage huge arrays in R
R ff memory usage
updated 9.5 years ago by 27k • written 9.5 years ago by ▴ 500
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1
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3.2k
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Answer: A: Solid Lines on IGV
9.6 years ago by Nicola Casiraghi ▴ 500
1
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0
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5.8k
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Answer: Answer: Filter annotated VCF snpEFF
updated 3.2 years ago by 45k • written 9.6 years ago by ▴ 500
0
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0
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2.7k
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Answer: Answer: detection of the copy number
updated 3.0 years ago by 45k • written 10.0 years ago by ▴ 500
1
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0
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21k
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Comment: C: Read Duplicates
10.0 years ago by Nicola Casiraghi ▴ 500
1
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0
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4.2k
views
Answer: Answer: Alignment plot of a small extract (sequence) from a .bam file
updated 3.0 years ago by 45k • written 10.0 years ago by ▴ 500
2
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1
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6.0k
views
Answer: Answer: How could I get one chromosome per sequence file since I already have the whole
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 500
1
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0
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9.6k
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Answer: Answer: EOF marker is absent in merged bam file
updated 3.1 years ago by 45k • written 10.1 years ago by ▴ 500
3
votes
3
replies
9.6k
views
EOF marker is absent in merged bam file
genome sequence-alignment next-gen-sequencing
updated 3.1 years ago by 45k • written 10.1 years ago by ▴ 500
0
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0
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8.4k
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Comment: C: Tumor clonality algorithms
10.2 years ago by Nicola Casiraghi ▴ 500
1
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0
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12k
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Comment: C: Options for generating proportional Venn Diagram of 4 sets
10.3 years ago by Nicola Casiraghi ▴ 500
4
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1
reply
12k
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Answer: Answer: Options for generating proportional Venn Diagram of 4 sets
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
0
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1
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2.9k
views
Comment: Comment: snp microarray data analysis
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
0
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0
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4.5k
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Comment: C: miRdeep2 mapper error
10.3 years ago by Nicola Casiraghi ▴ 500
0
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1
reply
3.4k
views
Comment: Comment: Read file exception when use platunas to assemble plant genome
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
1
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1
reply
3.2k
views
Comment: Comment: miRanalyzer run error
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
0
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1
reply
4.1k
views
Comment: Comment: Samtools Rmdup, file output empty
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
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0
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4.1k
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Answer: Answer: Samtools Rmdup, file output empty
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
0
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0
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4.2k
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Comment: C: web interface for getting rsID in dbSNP of some coordinate?
10.3 years ago by Nicola Casiraghi ▴ 500
0
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0
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8.1k
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Comment: Comment: Compare consecutive columns of a file and return the number of non-matching elem
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
1
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2
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30k
views
Comment: Comment: Marking and Removing duplicates using picard (picard-tools-1.129)
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
1
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1
reply
11k
views
Comment: Comment: Samtools mpileup quality scores all zero
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
2
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0
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16k
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Answer: Answer: boxplot with a for loop
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
2
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1
reply
2.7k
views
Answer: A: How to know a program I use is parallelizable?
10.3 years ago by Nicola Casiraghi ▴ 500
5
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1
reply
10k
views
Answer: Answer: Make 2 boxplot from a data frame by plotting values in 1 row with different col
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
0
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0
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3.0k
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Answer: Answer: Convert Indel format in vcf
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
1
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0
replies
2.0k
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Comment: Comment: List of involved genes in a specific disease
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
0
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1
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2.1k
views
Comment: Comment: Obtain secondary structure of protein residues
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 500
69 results • Page 1 of 2
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