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Bandage visualization of the transcriptome
Trinity transcriptomics Bandage RNA-seq
updated 13 months ago by 45k • written 13 months ago by ▴ 40
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1.4k
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Comment: Comment: TaxID mapping file
18 months ago by Lada ▴ 40
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1.4k
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Comment: Comment: TaxID mapping file
18 months ago by Lada ▴ 40
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4
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1.4k
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TaxID mapping file
annotation blobtools RNAseq decontamination transcriptomes
updated 6 months ago by • 0 • written 18 months ago by ▴ 40
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1.6k
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
18 months ago by Lada ▴ 40
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1
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1.6k
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
18 months ago by Lada ▴ 40
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1.6k
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
18 months ago by Lada ▴ 40
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5
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1.6k
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How to trim transcripts using information from NCBI contamination screen report
RNAseq assembly transcriptome contamination
18 months ago by Lada ▴ 40
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0
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27k
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Comment: Comment: BLAST options: max_target_seqs and num_alignments
19 months ago by Lada ▴ 40
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0
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746
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Pearson correlation for RNAseq data - input formats
vst Pearson-correlation TPM rlog RNA-seq
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 40
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573
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Salmon - mapping outputs
transcriptome RNAseq Salmon
2.0 years ago by Lada ▴ 40
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2.9k
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Comment: Comment: Providing multiple read files to Salmon
2.0 years ago by Lada ▴ 40
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1
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2.9k
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Comment: Comment: Providing multiple read files to Salmon
2.0 years ago by Lada ▴ 40
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1
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4.3k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
2.2 years ago by Lada ▴ 40
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2
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4.3k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
2.2 years ago by Lada ▴ 40
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0
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660
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OrthoPhy
orthophy orthofinder
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 40
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2
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4.3k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
updated 2.2 years ago by 154k • written 2.2 years ago by ▴ 40
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0
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1.4k
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Comment: Comment: ML tree inferred from multiple genes
2.2 years ago by Lada ▴ 40
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2
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1.4k
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ML tree inferred from multiple genes
phylogeny iqtree ML phylotranscriptomics orthologues
2.2 years ago by Lada ▴ 40
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0
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1.5k
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Answer: Answer: How to download Time Calibration Data for Phylogenetic tree estimation ?
2.2 years ago by Lada ▴ 40
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0
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1.4k
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Answer: Answer: Fossil calibration in PAML software?
2.2 years ago by Lada ▴ 40
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0
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2.0k
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Comment: Comment: Multiple sequence aligments - parallelisation
2.2 years ago by Lada ▴ 40
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1
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2.0k
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Comment: Comment: Multiple sequence aligments - parallelisation
2.2 years ago by Lada ▴ 40
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1
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2.0k
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Comment: Comment: Multiple sequence aligments - parallelisation
2.2 years ago by Lada ▴ 40
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5
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2.0k
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Multiple sequence aligments - parallelisation
MSA phylotranscriptomics muscle clustal
2.2 years ago by Lada ▴ 40
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0
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2.2k
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
2.2 years ago by Lada ▴ 40
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2.2k
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
2.2 years ago by Lada ▴ 40
3
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5
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2.2k
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Expected number of raw reads in fq.gz files in PE sequencing
RNA-seq fastq transcriptomics
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 40
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0
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2.2k
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Comment: Comment: EggNOG mapper annotation results
2.2 years ago by Lada ▴ 40
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1
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1.9k
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Comment: Comment: Comparative transcriptomics
2.5 years ago by Lada ▴ 40
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0
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888
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Comment: Comment: Corset -D parameter
2.6 years ago by Lada ▴ 40
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2
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888
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Corset -D parameter
RNAseq transcriptomic Corset
2.6 years ago by Lada ▴ 40
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0
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1.8k
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Comment: Comment: Salmon lib_format_counts.json - explanation
2.7 years ago by Lada ▴ 40
2
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2
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1.8k
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Salmon lib_format_counts.json - explanation
RNAseq strand-specificity transcriptomic Salmon
2.7 years ago by Lada ▴ 40
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0
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929
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Comment: Comment: What is correct percentage of sense-stranded transcripts in directional de novo
2.7 years ago by Lada ▴ 40
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1
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929
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What is correct percentage of sense-stranded transcripts in directional de novo assemblies ?
Trinity strand-specificity RNA-seq Transdecoder
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 40
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1
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33k
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Comment: Comment: Gene Set Enrichment Analysis after DESeq2
updated 9 months ago by 45k • written 2.8 years ago by ▴ 40
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0
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4.9k
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Comment: Comment: GSEA on nonmodel organisms
2.8 years ago by Lada ▴ 40
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0
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4.9k
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Comment: Comment: GSEA on nonmodel organisms
2.8 years ago by Lada ▴ 40
3
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4
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4.9k
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GSEA on nonmodel organisms
GSEA RNAseq transcriptomics multispecies R
2.8 years ago by Lada ▴ 40
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0
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2.0k
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Comment: Comment: Differentially gene expression multispecies
2.8 years ago by Lada ▴ 40
1
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0
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976
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Comment: Comment: How to normalise counts to compare RNAseq results between two spcecies
2.8 years ago by Lada ▴ 40
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1
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1.9k
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Comment: Comment: Comparative transcriptomics
2.8 years ago by Lada ▴ 40
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0
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1.7k
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Comment: Comment: comparative transcriptome - how to normalize and analyze DEGs?
2.8 years ago by Lada ▴ 40
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1
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2.6k
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Comment: Comment: Differential expression analysis
2.8 years ago by Lada ▴ 40
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0
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1.6k
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Comment: Comment: When comparing gene expression in different species, should I assemble separate
updated 2.8 years ago by 45k • written 2.8 years ago by ▴ 40
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0
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1.3k
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Answer: Answer: Differential Expression Analyses between closely related species
2.8 years ago by Lada ▴ 40
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0
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1.3k
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
3.7 years ago by Lada ▴ 40
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1
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1.3k
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
3.7 years ago by Lada ▴ 40
3
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4
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1.3k
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Transcriptome assembly -mixing stranded and non-stranded data
Transcriptome assembly
3.7 years ago by Lada ▴ 40
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