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4
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Comment: Comment: Tool for detecting valleys in Chip-seq like data?
2.5 years ago by Trivas ★ 1.9k
0
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1
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1.9k
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Comment: Comment: No Replicate RNA-Seq (But still biological replicates)
2.5 years ago by Trivas ★ 1.9k
0
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0
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3.7k
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Comment: Comment: How to calculate the coverage of list of genes in whole exome data
2.5 years ago by Trivas ★ 1.9k
1
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1
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1.5k
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Comment: Comment: RNAseq analysis of phage infection - should I split the counts mapping to host/p
2.5 years ago by Trivas ★ 1.9k
0
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1
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2.5k
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Comment: Comment: Strand non-specific bam file
2.5 years ago by Trivas ★ 1.9k
1
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0
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1.2k
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Comment: Comment: R script error R aborted or encountered a fatal error
2.6 years ago by Trivas ★ 1.9k
0
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0
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1.1k
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Comment: Comment: Deseq2/ComplexHeatmap - is it possible to combine 4 heatmaps together?
2.6 years ago by Trivas ★ 1.9k
4
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1
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2.0k
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Answer: Answer: how can i filter a sam file from a paf file
2.6 years ago by Trivas ★ 1.9k
1
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0
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3.1k
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Answer: Answer: extract gene coordinates and TSS from gene list
2.6 years ago by Trivas ★ 1.9k
1
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1
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4.3k
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Comment: Comment: Align miRNA library (small RNA-seq) without trimming
2.6 years ago by Trivas ★ 1.9k
2
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1
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4.3k
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Comment: Comment: Align miRNA library (small RNA-seq) without trimming
2.6 years ago by Trivas ★ 1.9k
1
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0
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977
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Answer: Answer: Dealing with very large gene-lists in GSEA
2.6 years ago by Trivas ★ 1.9k
2
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0
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11k
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Comment: Comment: How to find promoter sequence of a gene?
2.6 years ago by Trivas ★ 1.9k
1
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1
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1.7k
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Answer: Answer: fastq_screen error: Failed to calculate read length
2.6 years ago by Trivas ★ 1.9k
0
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1
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1.3k
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Answer: Answer: Does it possible to know what are the adjacent genes up to 1000bp upstream and
2.6 years ago by Trivas ★ 1.9k
2
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0
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1.1k
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Comment: Comment: Geom bar postive and negative values in a flipped plot
2.6 years ago by Trivas ★ 1.9k
1
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1
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1.5k
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Comment: Comment: RNA-SEQ
2.6 years ago by Trivas ★ 1.9k
0
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0
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1.8k
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Comment: Comment: Plot heatmap using row_splitting but splitting should based on a column in data
2.6 years ago by Trivas ★ 1.9k
2
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1
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1.5k
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Answer: Answer: RNA-SEQ
2.6 years ago by Trivas ★ 1.9k
0
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2
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5.5k
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Answer: Answer: collapsePathways function throwing error
2.6 years ago by Trivas ★ 1.9k
0
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0
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698
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Answer: Answer: How to compare RNA expression correlation?
2.7 years ago by Trivas ★ 1.9k
1
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1
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2.7k
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Comment: Comment: DGE/DEG Analysis for comparing multiple cell lines
2.7 years ago by Trivas ★ 1.9k
0
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1
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2.7k
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Comment: Comment: DGE/DEG Analysis for comparing multiple cell lines
2.7 years ago by Trivas ★ 1.9k
2
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0
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932
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Answer: Answer: How can I plot the heatmap with the fold changes of ChIP-seq occupancy levels of
2.7 years ago by Trivas ★ 1.9k
1
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1
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5.5k
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Answer: Answer: Aberrant splicing in bulk RNAseq
2.7 years ago by Trivas ★ 1.9k
0
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1
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1.6k
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Comment: Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
2.7 years ago by Trivas ★ 1.9k
1
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1
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1.6k
views
Comment: Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
2.7 years ago by Trivas ★ 1.9k
1
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5
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1.6k
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What's the absolute easiest way of visualizing stranded RNA-seq data on custom genomes?
gviz RNAseq stranded R
updated 2.7 years ago by 15k • written 2.7 years ago by ★ 1.9k
0
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1
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3.1k
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Comment: Comment: Using salmon on HISAT2 BAM files for transcript quantification
2.8 years ago by Trivas ★ 1.9k
3
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3
replies
2.6k
views
Adding lfcShrink to DESeq2 analysis
DGE DESeq2 lfcShrink
updated 2.9 years ago by 89k • written 2.9 years ago by ★ 1.9k
0
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1
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1.8k
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Comment: Comment: deeptools heatmap mostly empty
2.9 years ago by Trivas ★ 1.9k
0
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0
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2.5k
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Comment: Comment: Easier way to add another column if values in another fall within a range in R
2.9 years ago by Trivas ★ 1.9k
0
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0
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3.1k
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Answer: Answer: Finding unique and identical rows between multiple columns of a data frame in R
3.0 years ago by Trivas ★ 1.9k
0
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1
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2.5k
views
Comment: Comment: Differential expression analysis
3.0 years ago by Trivas ★ 1.9k
0
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2
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2.5k
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Answer: Answer: Differential expression analysis
3.0 years ago by Trivas ★ 1.9k
1
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0
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1.8k
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Comment: Comment: How can I get counts from transgenic expression in RNA-seq data?
3.0 years ago by Trivas ★ 1.9k
0
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0
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1.1k
views
Comment: Comment: problem with tidyverse for gene expression profile
3.0 years ago by Trivas ★ 1.9k
1
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1
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2.1k
views
Comment: Comment: Get transcription factor motif from list of gene symbols
3.0 years ago by Trivas ★ 1.9k
0
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1
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2.1k
views
Comment: Comment: Get transcription factor motif from list of gene symbols
3.0 years ago by Trivas ★ 1.9k
4
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6
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2.1k
views
Get transcription factor motif from list of gene symbols
motif factor R transcription
updated 3.0 years ago by 5.1k • written 3.0 years ago by ★ 1.9k
0
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0
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2.3k
views
Comment: Comment: How to perform paired t-test in R for obtaining p-value of each gene?
3.1 years ago by Trivas ★ 1.9k
1
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1
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1.2k
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Answer: Answer: Gviz group labels overlap
3.1 years ago by Trivas ★ 1.9k
0
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0
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1.4k
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Comment: Comment: What is the best way to pre-process RNA-Seq data?
3.1 years ago by Trivas ★ 1.9k
1
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1
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1.0k
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Answer: Answer: Detection of guest reads in Dual RNA-Seq
3.1 years ago by Trivas ★ 1.9k
0
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1
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1.6k
views
Comment: Comment: Help with plotting DEG-specific heatmap
3.1 years ago by Trivas ★ 1.9k
0
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1
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1.0k
views
Comment: Comment: qPCR RT experiment set up
3.1 years ago by Trivas ★ 1.9k
0
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1
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1.3k
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Comment: Comment: Genes time-series plots
3.1 years ago by Trivas ★ 1.9k
0
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1
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1.3k
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Answer: Answer: Genes time-series plots
3.1 years ago by Trivas ★ 1.9k
0
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0
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742
views
Answer: Answer: Mark exons and introns in Querey based on NCBI graphics
3.1 years ago by Trivas ★ 1.9k
1
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0
replies
1.4k
views
Comment: Comment: How to annotate probe to nearest gene promoter?
3.2 years ago by Trivas ★ 1.9k
311 results • Page 4 of 7
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