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577
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Comment: Comment: How to retrieve metadata for multiple genbank records
3 months ago by SushiRoll ▴ 140
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2
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577
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How to retrieve metadata for multiple genbank records
metadata Genbank
3 months ago by SushiRoll ▴ 140
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0
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972
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Comment: Comment: Time scaled tree with IQTree giving off looking branch length
5 months ago by SushiRoll ▴ 140
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2
replies
972
views
Time scaled tree with IQTree giving off looking branch length
bacteria phylogeny time evolution scaled
5 months ago by SushiRoll ▴ 140
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0
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764
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Comment: Comment: Remove especific reads from a metagenomic sequencing run
15 months ago by SushiRoll ▴ 140
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0
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1.2k
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Answer: Answer: Relative abundance of plasmid DNA content in each sample
15 months ago by SushiRoll ▴ 140
1
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2
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764
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Remove specific reads from a metagenomic sequencing run
metagenomics
updated 15 months ago by 8.1k • written 15 months ago by ▴ 140
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0
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620
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Comparison between Bracken outputs
Bracken Kraken Taxonomy
19 months ago by SushiRoll ▴ 140
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1
reply
1.5k
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Comment: Comment: Problems running Roary
updated 22 months ago by 45k • written 22 months ago by ▴ 140
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3
replies
1.5k
views
Problems running Roary
pangenome Roary
updated 22 months ago by 45k • written 22 months ago by ▴ 140
0
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0
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1.1k
views
Comment: Comment: Proper HTSeq usage on bacterial genome. Don't quite understand --t
2.1 years ago by SushiRoll ▴ 140
2
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2
replies
1.1k
views
Proper HTSeq usage on bacterial genome. Don't quite understand --t
RNAseq HTSeq
2.1 years ago by SushiRoll ▴ 140
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0
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2.7k
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Comment: Comment: Kraken2 is falsely assigning Klebsiella
2.1 years ago by SushiRoll ▴ 140
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1
reply
2.7k
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Comment: Comment: Kraken2 is falsely assigning Klebsiella
2.1 years ago by SushiRoll ▴ 140
6
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4
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2.7k
views
Kraken2 is falsely assigning Klebsiella
taxonomy Kraken2
2.1 years ago by SushiRoll ▴ 140
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2
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3.4k
views
Comment: Comment: Highly inflated p-values in GWAS by regenie
2.1 years ago by SushiRoll ▴ 140
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0
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2.0k
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Comment: Comment: Kraken2 recovering only classified reads
2.1 years ago by SushiRoll ▴ 140
2
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2
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2.0k
views
Kraken2 recovering only classified reads
Kraken2 taxonomy classification
2.1 years ago by SushiRoll ▴ 140
1
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0
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1.6k
views
Comment: Comment: How to determine number of SNPs called?
2.2 years ago by SushiRoll ▴ 140
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1
reply
1.6k
views
Comment: Comment: How to determine number of SNPs called?
2.2 years ago by SushiRoll ▴ 140
1
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3
replies
1.6k
views
How to determine number of SNPs called?
Snippy SNP
2.2 years ago by SushiRoll ▴ 140
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3
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4.4k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 2.9 years ago by ▴ 140
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0
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1.4k
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Comment: Comment: Bacterial metatransciptome antimicrobial resistance genes workflow?
2.5 years ago by SushiRoll ▴ 140
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1
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1.4k
views
Comment: Comment: Bacterial metatransciptome antimicrobial resistance genes workflow?
2.5 years ago by SushiRoll ▴ 140
1
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4
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1.4k
views
Bacterial metatransciptome antimicrobial resistance genes workflow?
RNAseq metatranscriptomics
2.5 years ago by SushiRoll ▴ 140
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0
replies
1.1k
views
Comment: Comment: Is there a SILVA database version with only prokaryotes?
2.5 years ago by SushiRoll ▴ 140
0
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2
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1.1k
views
Is there a SILVA database version with only prokaryotes?
taxonomy SILVA 16S
2.5 years ago by SushiRoll ▴ 140
0
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0
replies
682
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Inferring relative gene abundance from short reads
metagenomics read 16S short mapping
2.6 years ago by SushiRoll ▴ 140
0
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0
replies
1.7k
views
Comment: Comment: How many refseqs are in refseq.genomes.k21.s1000.msh?
2.7 years ago by SushiRoll ▴ 140
0
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1
reply
1.7k
views
Comment: Comment: How many refseqs are in refseq.genomes.k21.s1000.msh?
2.7 years ago by SushiRoll ▴ 140
2
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5
replies
1.7k
views
How many refseqs are in refseq.genomes.k21.s1000.msh?
mash refseq
2.7 years ago by SushiRoll ▴ 140
0
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1
reply
2.5k
views
Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
2.7 years ago by SushiRoll ▴ 140
1
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1
reply
1.7k
views
Answer: Answer: Genome data visualization
2.7 years ago by SushiRoll ▴ 140
0
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0
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1.5k
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Comment: Comment: Retrieve specific fasta sequences from a group of assemblies
2.8 years ago by SushiRoll ▴ 140
0
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1
reply
1.5k
views
Comment: Comment: Retrieve specific fasta sequences from a group of assemblies
2.8 years ago by SushiRoll ▴ 140
2
votes
4
replies
1.5k
views
Retrieve specific fasta sequences from a group of assemblies
CDS gene sequence
2.8 years ago by SushiRoll ▴ 140
1
vote
0
replies
797
views
Enzyme substrate prediction - where to start?
enzyme substrate Protein docking
2.8 years ago by SushiRoll ▴ 140
0
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0
replies
690
views
NMDS from SNP distance matrix
NMDS SNP
2.8 years ago by SushiRoll ▴ 140
0
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0
replies
1.9k
views
Comment: Comment: Need to compare two proteins
2.9 years ago by SushiRoll ▴ 140
6
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1
reply
1.9k
views
Answer: Answer: Need to compare two proteins
2.9 years ago by SushiRoll ▴ 140
0
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0
replies
2.9k
views
Comment: Comment: How can I trim this data using Trimmomatic?
2.9 years ago by SushiRoll ▴ 140
0
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1
reply
2.9k
views
Answer: Answer: How can I trim this data using Trimmomatic?
2.9 years ago by SushiRoll ▴ 140
0
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0
replies
1.4k
views
Comment: Comment: How many SNPs are too many?
2.9 years ago by SushiRoll ▴ 140
0
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1
reply
1.4k
views
Comment: Comment: How many SNPs are too many?
2.9 years ago by SushiRoll ▴ 140
0
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4
replies
1.4k
views
How many SNPs are too many?
snp
2.9 years ago by SushiRoll ▴ 140
0
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0
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4.4k
views
Comment: Comment: Discussion question: Cutoff for SNP phylogeny
2.9 years ago by SushiRoll ▴ 140
0
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0
replies
813
views
Using -fconst to run IQTree
IQtree phylogeny
3.0 years ago by SushiRoll ▴ 140
1
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0
replies
1.0k
views
Snippy core output
SNP Snippy-core Snippy
3.0 years ago by SushiRoll ▴ 140
0
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0
replies
647
views
qPCR and HT-PCR inconsistency
HT-PCR qPCR
3.0 years ago by SushiRoll ▴ 140
0
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0
replies
1.6k
views
Comment: Comment: Doubt with snippy-multi reference
3.1 years ago by SushiRoll ▴ 140
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