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115
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Comparison between Bracken outputs
Bracken Kraken Taxonomy
23 days ago by SushiRoll ▴ 120
0
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1
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531
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Comment: Comment: Problems running Roary
updated 3 months ago by 43k • written 3 months ago by ▴ 120
0
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3
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531
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Problems running Roary
pangenome Roary
updated 3 months ago by 43k • written 3 months ago by ▴ 120
0
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0
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384
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Comment: Comment: Proper HTSeq usage on bacterial genome. Don't quite understand --t
6 months ago by SushiRoll ▴ 120
2
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2
replies
384
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Proper HTSeq usage on bacterial genome. Don't quite understand --t
RNAseq HTSeq
6 months ago by SushiRoll ▴ 120
0
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0
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869
views
Comment: Comment: Kraken2 is falsely assigning Klebsiella
7 months ago by SushiRoll ▴ 120
1
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1
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869
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Comment: Comment: Kraken2 is falsely assigning Klebsiella
7 months ago by SushiRoll ▴ 120
4
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4
replies
869
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Kraken2 is falsely assigning Klebsiella
taxonomy Kraken2
7 months ago by SushiRoll ▴ 120
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2
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1.2k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
7 months ago by SushiRoll ▴ 120
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0
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614
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Comment: Comment: Kraken2 recovering only classified reads
7 months ago by SushiRoll ▴ 120
2
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2
replies
614
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Kraken2 recovering only classified reads
Kraken2 taxonomy classification
7 months ago by SushiRoll ▴ 120
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0
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804
views
Comment: Comment: How to determine number of SNPs called?
8 months ago by SushiRoll ▴ 120
0
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1
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804
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Comment: Comment: How to determine number of SNPs called?
8 months ago by SushiRoll ▴ 120
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3
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804
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How to determine number of SNPs called?
Snippy SNP
8 months ago by SushiRoll ▴ 120
0
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3
replies
3.8k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 17 months ago by ▴ 120
0
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0
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714
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Comment: Comment: Bacterial metatransciptome antimicrobial resistance genes workflow?
11 months ago by SushiRoll ▴ 120
0
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1
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714
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Comment: Comment: Bacterial metatransciptome antimicrobial resistance genes workflow?
11 months ago by SushiRoll ▴ 120
1
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4
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714
views
Bacterial metatransciptome antimicrobial resistance genes workflow?
RNAseq metatranscriptomics
11 months ago by SushiRoll ▴ 120
0
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0
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567
views
Comment: Comment: Is there a SILVA database version with only prokaryotes?
12 months ago by SushiRoll ▴ 120
0
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2
replies
567
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Is there a SILVA database version with only prokaryotes?
taxonomy SILVA 16S
12 months ago by SushiRoll ▴ 120
0
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0
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337
views
Inferring relative gene abundance from short reads
metagenomics read 16S short mapping
12 months ago by SushiRoll ▴ 120
0
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0
replies
931
views
Comment: Comment: How many refseqs are in refseq.genomes.k21.s1000.msh?
13 months ago by SushiRoll ▴ 120
0
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1
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931
views
Comment: Comment: How many refseqs are in refseq.genomes.k21.s1000.msh?
13 months ago by SushiRoll ▴ 120
2
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5
replies
931
views
How many refseqs are in refseq.genomes.k21.s1000.msh?
mash refseq
13 months ago by SushiRoll ▴ 120
0
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1
reply
1.2k
views
Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
14 months ago by SushiRoll ▴ 120
1
vote
1
reply
880
views
Answer: Answer: Genome data visualization
14 months ago by SushiRoll ▴ 120
0
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0
replies
790
views
Comment: Comment: Retrieve specific fasta sequences from a group of assemblies
15 months ago by SushiRoll ▴ 120
0
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1
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790
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Comment: Comment: Retrieve specific fasta sequences from a group of assemblies
15 months ago by SushiRoll ▴ 120
2
votes
4
replies
790
views
Retrieve specific fasta sequences from a group of assemblies
CDS gene sequence
15 months ago by SushiRoll ▴ 120
1
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0
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436
views
Enzyme substrate prediction - where to start?
enzyme substrate Protein docking
15 months ago by SushiRoll ▴ 120
0
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0
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368
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NMDS from SNP distance matrix
NMDS SNP
15 months ago by SushiRoll ▴ 120
0
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0
replies
811
views
Comment: Comment: Need to compare two proteins
16 months ago by SushiRoll ▴ 120
6
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1
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811
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Answer: Answer: Need to compare two proteins
16 months ago by SushiRoll ▴ 120
0
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0
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1.6k
views
Comment: Comment: How can I trim this data using Trimmomatic?
16 months ago by SushiRoll ▴ 120
0
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1
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1.6k
views
Answer: Answer: How can I trim this data using Trimmomatic?
17 months ago by SushiRoll ▴ 120
0
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0
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761
views
Comment: Comment: How many SNPs are too many?
17 months ago by SushiRoll ▴ 120
0
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1
reply
761
views
Comment: Comment: How many SNPs are too many?
17 months ago by SushiRoll ▴ 120
0
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4
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761
views
How many SNPs are too many?
snp
17 months ago by SushiRoll ▴ 120
0
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0
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3.8k
views
Comment: Comment: Discussion question: Cutoff for SNP phylogeny
17 months ago by SushiRoll ▴ 120
0
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0
replies
410
views
Using -fconst to run IQTree
IQtree phylogeny
17 months ago by SushiRoll ▴ 120
0
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0
replies
631
views
Snippy core output
SNP Snippy-core Snippy
17 months ago by SushiRoll ▴ 120
0
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0
replies
346
views
qPCR and HT-PCR inconsistency
HT-PCR qPCR
17 months ago by SushiRoll ▴ 120
0
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0
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989
views
Comment: Comment: Doubt with snippy-multi reference
18 months ago by SushiRoll ▴ 120
2
votes
2
replies
989
views
Doubt with snippy-multi reference
snippy-multi Snippy
18 months ago by SushiRoll ▴ 120
1
vote
0
replies
1.0k
views
Answer: Answer: How to download a genome assembly from the NCBI website?
18 months ago by SushiRoll ▴ 120
0
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0
replies
341
views
Problems installing PlasClass
PlasClass
18 months ago by SushiRoll ▴ 120
2
votes
1
reply
887
views
Comment: Comment: How to analyse multiple files in FastQC
18 months ago by SushiRoll ▴ 120
0
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0
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918
views
Comment: Comment: Resources for heavy snippy-core running
19 months ago by SushiRoll ▴ 120
0
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3
replies
918
views
Resources for heavy snippy-core running
Snippy snippy-core
19 months ago by SushiRoll ▴ 120
0
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1
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1.1k
views
Comment: Comment: samtools sort: couldn't allocate memory for bam_mem
19 months ago by SushiRoll ▴ 120
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