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questions
3
votes
9
replies
1.7k
views
reference fasta creation
reference
mapping
fasta
3.0 years ago by
geneart$$
▴ 50
0
votes
4
replies
1.9k
views
Understanding GATK evaluation metrics
next-gen
snp
GATK
metrics
3.0 years ago by
geneart$$
▴ 50
2
votes
2
replies
781
views
RNAseq normal matches using publicly available databases
RNA-Seq
TCGA
DGE
normal
tumor
updated 3.3 years ago by
ATpoint
82k • written 3.3 years ago by
geneart$$
▴ 50
4
votes
5
replies
1.9k
views
VariantToTable not calling HET HOM etc
GATK
VariantsToTable
updated 3.6 years ago by
Ram
43k • written 3.6 years ago by
geneart$$
▴ 50
0
votes
3
replies
1.8k
views
Variant filtration on lowGQ values
GATK
Genotype filtering
3.6 years ago by
geneart$$
▴ 50
0
votes
0
replies
885
views
GATK VQSR output
GATK
ApplyVQSR
3.7 years ago by
geneart$$
▴ 50
4
votes
5
replies
1.3k
views
VQSR no r file being created
GATK
VQSR
3.7 years ago by
geneart$$
▴ 50
0
votes
2
replies
1.1k
views
VariantEval GATK error
GATK
Variant Calling
Germline
Error
3.7 years ago by
geneart$$
▴ 50
0
votes
3
replies
1.1k
views
GATK variant calling
next-gen
variant calling
GATK
3.7 years ago by
geneart$$
▴ 50
3
votes
9
replies
973
views
unix, awk or sed question on splitting lines
unix
awk
sed
updated 3.9 years ago by
GenoMax
142k • written 3.9 years ago by
geneart$$
▴ 50
0
votes
4
replies
732
views
exome seq- Post mapping question
variant-calling
exome-seq
updated 11 months ago by
Ram
43k • written 4.0 years ago by
geneart$$
▴ 50
11
votes
15
replies
3.7k
views
Cutadapt for loop issue
unix
cutadapt
scripting
forloop
updated 4.1 years ago by
GouthamAtla
12k • written 4.1 years ago by
geneart$$
▴ 50
0
votes
1
reply
2.3k
views
SAM to eland conversion
RNA-Seq
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
geneart$$
▴ 50
2
votes
6
replies
3.1k
views
SAM File target extraction
alignment
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
geneart$$
▴ 50
0
votes
6
replies
6.7k
views
EdgeR toptags question
EdgeR
Differential-expression
updated 2.6 years ago by
Ram
43k • written 9.9 years ago by
geneart$$
▴ 50
5
votes
4
replies
8.0k
views
miRNA names from ensemble IDs
RNA-Seq
updated 2.6 years ago by
Ram
43k • written 10.1 years ago by
geneart$$
▴ 50
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