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2
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2
replies
5.0k
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Advantages of Biobase's TRANSFAC over and above what is freely available?
TRANSFAC Transcription Regulation UCSC TFBS
updated 2.6 years ago by • 0 • written 11.3 years ago by ▴ 290
0
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2
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5.1k
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Comment: C: Help needed parsing VCF files
updated 5.7 years ago by 45k • written 11.3 years ago by ▴ 290
0
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0
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4.0k
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Comment: C: Making a Dictionary for all Possible Mutations
updated 5.7 years ago by 45k • written 11.3 years ago by ▴ 290
0
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1
reply
4.2k
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Comment: A: CNV analysis from a family of 4 exome sequences
updated 5.7 years ago by 45k • written 11.3 years ago by ▴ 290
2
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1
reply
2.8k
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Answer: A: Mutation protein program at the exactly point
updated 5.7 years ago by 45k • written 11.3 years ago by ▴ 290
0
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0
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10k
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Comment: C: Most effective way to merge individual VCF files into VCF files merged by chromo
updated 5.7 years ago by 45k • written 11.3 years ago by ▴ 290
12
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1
reply
82k
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Answer: A: VCF files: Change Chromosome Notation
updated 5.7 years ago by 45k • written 11.4 years ago by ▴ 290
3
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0
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3.2k
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Answer: A: Linkage disequilibrium plots
updated 5.7 years ago by 45k • written 11.4 years ago by ▴ 290
0
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0
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10k
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Comment: C: Most effective way to merge individual VCF files into VCF files merged by chromo
updated 5.9 years ago by 45k • written 11.3 years ago by ▴ 290
0
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0
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7.4k
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Answer: A: How to interpret and extract from a Vcf file Genotype informations as values
updated 5.9 years ago by 45k • written 11.3 years ago by ▴ 290
1
vote
0
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2.6k
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Answer: A: Which Reference Index to use for Clinical Variants (SNPs and INDELs) Detection ?
updated 6.3 years ago by 45k • written 11.2 years ago by ▴ 290
7
votes
7
replies
10k
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Most effective way to merge individual VCF files into VCF files merged by chromosome
VCF VCFmerge VCFtools merge Plinkseq
updated 6.8 years ago by 20 • written 11.3 years ago by ▴ 290
2
votes
2
replies
2.9k
views
Background information and recommendations for phasing ASW whole genomes
BEAGLE Phasing NGS
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 290
0
votes
1
reply
2.5k
views
Batch load in haploview
haploview commandline
updated 3.7 years ago by 45k • written 11.1 years ago by ▴ 290
0
votes
0
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2.5k
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Burden tests in plinkseq (v0.08) running exponentially slower with more variants?
plinkseq genetics association statistics
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 290
0
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0
replies
3.3k
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Comment: Comment: Making use of phased haplotypes in rare variant burden testing
updated 3.7 years ago by 45k • written 11.1 years ago by ▴ 290
9
votes
2
replies
3.3k
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Making use of phased haplotypes in rare variant burden testing
NGS Phasing Burden GWAS Haplotypes
updated 3.7 years ago by 45k • written 11.1 years ago by ▴ 290
0
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0
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2.5k
views
Comment: C: Batch load in haploview
11.1 years ago by fadsfadfdsafdasfdsa ▴ 290
0
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1
reply
2.2k
views
Tools that represent standard output from local ancestry estimation software visually
local-ancestry ngs visualize gwas
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 290
0
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1
reply
2.5k
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Comment: C: Filter according to a list of snps, setting SNPs not found in data as missing
11.1 years ago by fadsfadfdsafdasfdsa ▴ 290
4
votes
3
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2.5k
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Filter according to a list of snps, setting SNPs not found in data as missing
plink missing SNP GWAS
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 290
1
vote
1
reply
3.1k
views
Comment: Comment: File Containing LD-Pruned SNPs with MAF in CEU and YRI populations?
updated 3.8 years ago by 45k • written 11.2 years ago by ▴ 290
0
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0
replies
4.6k
views
Answer: Answer: Unique SNP sharing between populations
updated 3.8 years ago by 45k • written 11.2 years ago by ▴ 290
3
votes
3
replies
3.1k
views
File Containing LD-Pruned SNPs with MAF in CEU and YRI populations?
Local-Ancestry Linkage-Disequilibrium Admixture
updated 3.8 years ago by 45k • written 11.2 years ago by ▴ 290
2
votes
0
replies
6.0k
views
Comment: Comment: To remove genotype "./." from vcf file with awk
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 290
0
votes
1
reply
2.0k
views
Comment: Comment: Software that finds regions matching characteristics such as number of genes in
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 290
4
votes
3
replies
2.0k
views
Software that finds regions matching characteristics such as number of genes in segment
GWAS WGS Software Statistics
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 290
0
votes
0
replies
1.8k
views
Get output for a list of Tracks & List of regions from UCSC table broswer
Batch Multiple TableBrowser UCSC
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 290
0
votes
0
replies
1.7k
views
Tabix indexing a masterVar file
index tabix CGI masterVar
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 290
0
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1
reply
5.1k
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Comment: C: Help needed parsing VCF files
11.3 years ago by fadsfadfdsafdasfdsa ▴ 290
1
vote
0
replies
2.2k
views
What tools are there that enable (more sophisticated) analysis of phased VCF files?
NGS phasing vcf
11.3 years ago by fadsfadfdsafdasfdsa ▴ 290
0
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0
replies
10k
views
Comment: C: Most effective way to merge individual VCF files into VCF files merged by chromo
11.3 years ago by fadsfadfdsafdasfdsa ▴ 290
0
votes
0
replies
2.9k
views
Comment: C: Background information and recommendations for phasing ASW whole genomes
11.3 years ago by fadsfadfdsafdasfdsa ▴ 290
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