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Comment: Comment: including samples for which group is unknown to help adjust for another variable
2.4 years ago by pilargmarch ▴ 120
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including samples for which group is unknown to help adjust for another variable
TCGA design RNA-Seq deseq2
updated 2.4 years ago by 4.8k • written 2.4 years ago by ▴ 120
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Comment: Comment: including samples for which group is unknown to help adjust for another variable
2.4 years ago by pilargmarch ▴ 120
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Answer: Answer: Matching gene-expression data with clinical data: best practices.
2.5 years ago by pilargmarch ▴ 120
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Answer: Answer: paired test for differential expression on RNAseq data
2.6 years ago by pilargmarch ▴ 120
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Answer: Answer: Mapping IDs and file names from TCGA datasets
2.6 years ago by pilargmarch ▴ 120
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Answer: Answer: TCGAbiolinks HT-Seq count
2.7 years ago by pilargmarch ▴ 120
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Answer: Answer: Biallelicly affected genes in pan cancer tcga data using cbioportal
2.7 years ago by pilargmarch ▴ 120
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Answer: Answer: cBioportal: Mutations in the database don't appear in the portal
2.7 years ago by pilargmarch ▴ 120
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Answer: Answer: Questions on analyzing TCGA proteome profiling data.
2.7 years ago by pilargmarch ▴ 120
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when do we need to normalize for GC-content and/or length bias in RNA-Seq reads?
gc-content normalization RNA-seq bias edaseq
updated 2.8 years ago by 45k • written 2.9 years ago by ▴ 120
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