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410
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Comment:
Comment: How to remove rows with empty gene symbols from a seurat object?
21 days ago by
Chris
▴ 360
2
votes
3
replies
410
views
How to remove rows with empty gene symbols from a seurat object?
seurat
updated 21 days ago by
Michael
55k • written 23 days ago by
Chris
▴ 360
0
votes
0
replies
247
views
Your suggestion how to annotate cell type from visium data
spatial-transcriptomics
4 months ago by
Chris
▴ 360
0
votes
0
replies
4.8k
views
Comment:
Comment: Clustering in single cell
4 months ago by
Chris
▴ 360
0
votes
0
replies
1.0k
views
Comment:
Comment: Help with subset seurat object by a column in metadata
5 months ago by
Chris
▴ 360
0
votes
0
replies
1.0k
views
Comment:
Comment: Help with subset seurat object by a column in metadata
5 months ago by
Chris
▴ 360
1
vote
4
replies
1.0k
views
Help with subset seurat object by a column in metadata
seurat
5 months ago by
Chris
▴ 360
0
votes
0
replies
305
views
Gene-pathway network with FDR or p value
clusterprofiler
7 months ago by
Chris
▴ 360
1
vote
0
replies
1.3k
views
Comment:
Comment: Can't increase font size for x axis
8 months ago by
Chris
▴ 360
1
vote
2
replies
1.3k
views
Comment:
Comment: Can't increase font size for x axis
8 months ago by
Chris
▴ 360
0
votes
0
replies
1.3k
views
Comment:
Comment: Can't increase font size for x axis
8 months ago by
Chris
▴ 360
0
votes
1
reply
1.3k
views
Comment:
Comment: Can't increase font size for x axi
8 months ago by
Chris
▴ 360
0
votes
1
reply
1.3k
views
Comment:
Comment: Can't increase font size for x axi
8 months ago by
Chris
▴ 360
11
votes
11
replies
1.3k
views
Can't increase font size for x axis
R
ggplot2
8 months ago by
Chris
▴ 360
0
votes
0
replies
562
views
Comment:
Comment: Help with cnet plot for customize pathway from MSigDb
8 months ago by
Chris
▴ 360
0
votes
2
replies
562
views
Help with cnet plot for customize pathway from MSigDb
cnet
8 months ago by
Chris
▴ 360
1
vote
1
reply
1.0k
views
Comment:
Comment: Help with running egsea()
10 months ago by
Chris
▴ 360
1
vote
1
reply
1.0k
views
Comment:
Comment: Help with running egsea()
10 months ago by
Chris
▴ 360
5
votes
5
replies
1.0k
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
10 months ago by
Chris
▴ 360
0
votes
0
replies
353
views
Empty table plot using plotGseaTable()
FGSEA
10 months ago by
Chris
▴ 360
0
votes
0
replies
331
views
Filter low express genes in microarray data
microarray
10 months ago by
Chris
▴ 360
1
vote
1
reply
688
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 10 months ago by
Gordon Smyth
★ 7.8k • written 11 months ago by
Chris
▴ 360
0
votes
0
replies
312
views
How to annotate pairwise p value from limma (3 groups) in a combine multiple boxplot?
limma
boxplot
11 months ago by
Chris
▴ 360
0
votes
1
reply
695
views
Comment:
Comment: Visualize pathways from MSigDB
11 months ago by
Chris
▴ 360
3
votes
3
replies
695
views
Visualize pathways from MSigDB
MSigdb
11 months ago by
Chris
▴ 360
0
votes
0
replies
268
views
How to check if a few pathways have relationship?
MSigdb
REACTOME
KEGG
11 months ago by
Chris
▴ 360
0
votes
0
replies
758
views
Comment:
Comment: Limma compare between 3 conditions vs 2 conditions
11 months ago by
Chris
▴ 360
0
votes
0
replies
286
views
Number of pathway result from GSVA
GSVA
11 months ago by
Chris
▴ 360
1
vote
3
replies
758
views
Limma compare between 3 conditions vs 2 conditions
Limma
updated 11 months ago by
Gordon Smyth
★ 7.8k • written 11 months ago by
Chris
▴ 360
1
vote
1
reply
879
views
Help with SCENIC+
scenic-plus
updated 11 months ago by
corbettberry
▴ 10 • written 16 months ago by
Chris
▴ 360
0
votes
0
replies
1.0k
views
Comment:
Comment: Differential express genes in imbalance groups
12 months ago by
Chris
▴ 360
0
votes
0
replies
1.0k
views
Comment:
Comment: Differential express genes in imbalance groups
12 months ago by
Chris
▴ 360
4
votes
5
replies
1.0k
views
Differential express genes in imbalance groups
Limma
12 months ago by
Chris
▴ 360
0
votes
0
replies
502
views
Comment:
Comment: Upset plot
12 months ago by
Chris
▴ 360
1
vote
2
replies
502
views
Upset plot
upsetplot
12 months ago by
Chris
▴ 360
0
votes
0
replies
508
views
Comment:
Comment: How to get genes in a gene set in msigdb?
12 months ago by
Chris
▴ 360
0
votes
2
replies
508
views
How to get genes in a gene set in msigdb?
msigdb
11 months ago by
Chris
▴ 360
0
votes
0
replies
289
views
Function normalize raw microarray data for GSVA
gsva
12 months ago by
Chris
▴ 360
0
votes
0
replies
612
views
Error in validObject(.Object) : invalid class “ExpressionSet” object: sampleNames differ between assayData and phenoData
GSVA
12 months ago by
Chris
▴ 360
0
votes
1
reply
842
views
Comment:
Comment: Differential expression at pathway level
13 months ago by
Chris
▴ 360
1
vote
0
replies
842
views
Comment:
Comment: Differential expression at pathway level
13 months ago by
Chris
▴ 360
5
votes
4
replies
842
views
Differential expression at pathway level
GSVA
updated 13 months ago by
AquaDeath
▴ 80 • written 13 months ago by
Chris
▴ 360
0
votes
1
reply
1.5k
views
Comment:
Comment: Remove X in row name with only number
13 months ago by
Chris
▴ 360
0
votes
1
reply
1.5k
views
Comment:
Comment: Remove X in row name with only number
13 months ago by
Chris
▴ 360
0
votes
1
reply
1.5k
views
Comment:
Comment: Remove X in row name with only number
13 months ago by
Chris
▴ 360
7
votes
12
replies
2.8k
views
Integrated genes from bulk RNA seq and ATAC seq
ATAC-seq
bulk-RNA
updated 13 months ago by
Ram
45k • written 22 months ago by
Chris
▴ 360
0
votes
1
reply
1.5k
views
Comment:
Comment: Remove X in row name with only number
13 months ago by
Chris
▴ 360
0
votes
1
reply
1.5k
views
Comment:
Comment: Remove X in row name with only number
13 months ago by
Chris
▴ 360
4
votes
11
replies
1.5k
views
Remove X in row name with only number
GSVA
updated 13 months ago by
Ram
45k • written 13 months ago by
Chris
▴ 360
0
votes
1
reply
2.6k
views
Comment:
Comment: Help with gatk BaseRecalibrator
15 months ago by
Chris
▴ 360
513 results • Page
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