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1
vote
0
replies
1.1k
views
Comment:
Comment: Extracting exons using GenomicFeatures is different from manual extraction
10 months ago by
gernophil
▴ 80
0
votes
0
replies
1.7k
views
Comment:
Comment: ERROR using CIBERSORTx Docker version
10 months ago by
gernophil
▴ 80
0
votes
0
replies
848
views
Comment:
Comment: CIBERSORTx/fractions docker outputs only zeros if --absolute TRUE
10 months ago by
gernophil
▴ 80
0
votes
1
reply
848
views
CIBERSORTx/fractions docker outputs only zeros if --absolute TRUE
docker
CIBERSORTx
10 months ago by
gernophil
▴ 80
0
votes
0
replies
545
views
Comment:
Comment: Use DESeq (1) data with DESeq2 Package?
10 months ago by
gernophil
▴ 80
1
vote
2
replies
545
views
Use DESeq (1) data with DESeq2 Package?
DESeq
DESeq2
10 months ago by
gernophil
▴ 80
0
votes
0
replies
57k
views
Answer:
Answer: Calculating TPM from featureCounts output
11 months ago by
gernophil
▴ 80
0
votes
7
replies
1.4k
views
fasterq-dump outputs "Cannot use '--ngc' as ngc file."
snakemake
sra-tools
SRA
updated 10 months ago by
Ram
43k • written 12 months ago by
gernophil
▴ 80
0
votes
1
reply
1.4k
views
Comment:
Comment: fasterq-dump outputs "Cannot use '--ngc' as ngc file."
12 months ago by
gernophil
▴ 80
0
votes
1
reply
1.4k
views
Comment:
Comment: fasterq-dump outputs "Cannot use '--ngc' as ngc file."
12 months ago by
gernophil
▴ 80
0
votes
1
reply
1.4k
views
Comment:
Comment: fasterq-dump outputs "Cannot use '--ngc' as ngc file."
12 months ago by
gernophil
▴ 80
0
votes
0
replies
1.9k
views
Comment:
Comment: BLAST Database error: No alias or index file found for nucleotide database
14 months ago by
gernophil
▴ 80
0
votes
1
reply
1.9k
views
Comment:
Comment: BLAST Database error: No alias or index file found for nucleotide database
14 months ago by
gernophil
▴ 80
0
votes
1
reply
1.9k
views
Comment:
Comment: BLAST Database error: No alias or index file found for nucleotide database
14 months ago by
gernophil
▴ 80
0
votes
1
reply
734
views
Comment:
Comment: biomaRt crashes R studio
14 months ago by
gernophil
▴ 80
1
vote
3
replies
734
views
biomaRt crashes R studio
biomaRt
updated 14 months ago by
Matthias Zepper
4.6k • written 14 months ago by
gernophil
▴ 80
10
votes
4
replies
1.3k
views
Difference between ENSEMBL releases
release
genome
ENSEMBL
updated 16 months ago by
Jean-Karim Heriche
27k • written 16 months ago by
gernophil
▴ 80
0
votes
1
reply
1.3k
views
Comment:
Comment: Difference between ENSEMBL releases
16 months ago by
gernophil
▴ 80
2
votes
5
replies
1.1k
views
Why multiple SYMBOLS, Consequences... for Variant Effect Predictor (VEP)
VEP
updated 7 weeks ago by
barslmn
★ 2.1k • written 17 months ago by
gernophil
▴ 80
3
votes
3
replies
751
views
Annotate VCF with Pathways (without performing GSEA)
pathway_analysis
VCF
17 months ago by
gernophil
▴ 80
0
votes
0
replies
751
views
Answer:
Answer: Annotate VCF with Pathways (without performing GSEA)
17 months ago by
gernophil
▴ 80
0
votes
0
replies
751
views
Comment:
Comment: Annotate VCF with Pathways (without performing GSEA)
17 months ago by
gernophil
▴ 80
1
vote
1
reply
495
views
Download SraRunTable via entrez-direct
SRA
RunTable
command
line
updated 18 months ago by
GenoMax
142k • written 18 months ago by
gernophil
▴ 80
1
vote
3
replies
897
views
bcftools merge doesn't recalculate AF
bcftools
updated 20 months ago by
4galaxy77
2.8k • written 20 months ago by
gernophil
▴ 80
0
votes
0
replies
450
views
Filtering and sorting of multiallelic sites
VCF
multiallelic
20 months ago by
gernophil
▴ 80
3
votes
1
reply
815
views
Better splitting of mutliallelic sites then bcftools norm --m-any
bcftools
updated 11 months ago by
Ram
43k • written 20 months ago by
gernophil
▴ 80
0
votes
0
replies
1.4k
views
Comment:
Comment: Can't convert multiple BAMs from SRA to SAMs
21 months ago by
gernophil
▴ 80
0
votes
1
reply
1.4k
views
Comment:
Comment: Can't convert multiple BAMs from SRA to SAMs
22 months ago by
gernophil
▴ 80
2
votes
6
replies
1.4k
views
Can't convert multiple SAMs from SRA to BAMs
samtools
sam-dump
SRA
updated 11 months ago by
Ram
43k • written 22 months ago by
gernophil
▴ 80
0
votes
1
reply
1.4k
views
Comment:
Comment: Can't convert multiple BAMs from SRA to SAMs
22 months ago by
gernophil
▴ 80
0
votes
1
reply
1.2k
views
Comment:
Comment: headers missing in efetch results for SRA database
22 months ago by
gernophil
▴ 80
0
votes
1
reply
1.2k
views
Comment:
Comment: headers missing in efetch results for SRA database
22 months ago by
gernophil
▴ 80
2
votes
7
replies
1.2k
views
headers missing in efetch results for SRA database
SRA
Entrez.Direct
efetch
updated 22 months ago by
PeterC_NCBI
▴ 410 • written 22 months ago by
gernophil
▴ 80
0
votes
1
reply
1.2k
views
Comment:
Comment: headers missing in efetch results for SRA database
22 months ago by
gernophil
▴ 80
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