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2
votes
1
reply
572
views
Answer:
Answer: Transcription factors database
4 months ago by
pm2012
▴ 130
0
votes
0
replies
154
views
Low alignment rates for randomly shredded TCR-B library with MixCR
alignment
shotgun
MixCR
TCR
4 months ago by
pm2012
▴ 130
0
votes
0
replies
335
views
Comment:
Comment: Help creating R plot for visualizing variant frequencies in multiple sample
5 months ago by
pm2012
▴ 130
2
votes
2
replies
335
views
Help creating R plot for visualizing variant frequencies in multiple sample
frequency
R
variants
visualization
plots
5 months ago by
pm2012
▴ 130
0
votes
0
replies
215
views
Extracting internal reads from SmartSeq3 data using zUMIs
internal
UMI
zUMIs
reads
SmartSeq3
6 months ago by
pm2012
▴ 130
0
votes
0
replies
321
views
Fisher's exact test for comparing TCR clonotype counts
R
TCR-seq
13 months ago by
pm2012
▴ 130
0
votes
0
replies
659
views
Comment:
Comment: Differential abundance analysis for bulk TCR-seq data
13 months ago by
pm2012
▴ 130
2
votes
3
replies
659
views
Differential abundance analysis for bulk TCR-seq data
enrichment
TCR
differential
DESEQ
13 months ago by
pm2012
▴ 130
0
votes
0
replies
713
views
Comment:
C: Empty VCF file from Mutect2 v. GATK 4.1.6.0 in tumor only mode
21 months ago by
pm2012
▴ 130
0
votes
2
replies
713
views
Empty VCF file from Mutect2 v. GATK 4.1.6.0 in tumor only mode
GATK
SNP
21 months ago by
pm2012
▴ 130
1
vote
0
replies
2.1k
views
Answer:
A: Am I crazy, or are most published RNA-seq studies vastly underpowered?
22 months ago by
pm2012
▴ 130
0
votes
0
replies
908
views
Comment:
C: Reliability of gene expression with low exonic counts in bulk RNA-seq data
22 months ago by
pm2012
▴ 130
4
votes
8
replies
908
views
Reliability of gene expression with low exonic counts in bulk RNA-seq data
next-gen
RNA-Seq
gene_expression
updated 22 months ago by
i.sudbery
14k • written 22 months ago by
pm2012
▴ 130
0
votes
0
replies
908
views
Comment:
C: Reliability of gene expression with low exonic counts in bulk RNA-seq data
22 months ago by
pm2012
▴ 130
0
votes
0
replies
908
views
Comment:
C: Reliability of gene expression with low exonic counts in bulk RNA-seq data
22 months ago by
pm2012
▴ 130
0
votes
0
replies
908
views
Comment:
C: Reliability of gene expression with low exonic counts in bulk RNA-seq data
22 months ago by
pm2012
▴ 130
9
votes
15
replies
7.7k
views
6 follow
GTF/GFF for non-coding RNA
GFF
GTF
Ensembl
Annotation
long non-coding
updated 5.6 years ago by
lironyoffe
• 0 • written 6.1 years ago by
pm2012
▴ 130
0
votes
3
replies
2.6k
views
Error Runnin miRDeep2
mirDeep2
microRNA
sequencing
updated 6.0 years ago by
jon.brate
▴ 280 • written 7.0 years ago by
pm2012
▴ 130
0
votes
1
reply
7.7k
views
Comment:
C: GTF/GFF for non-coding RNA
6.1 years ago by
pm2012
▴ 130
0
votes
1
reply
4.4k
views
Comment:
C: Improving alignment rates for RNA-seq
6.1 years ago by
pm2012
▴ 130
5
votes
9
replies
4.4k
views
Improving alignment rates for RNA-seq
RNA-Seq
Tophat
alignment
updated 6.1 years ago by
michael.ante
★ 3.7k • written 6.1 years ago by
pm2012
▴ 130
0
votes
1
reply
2.6k
views
Analysis Pipelines for MBD-Seq Data
MBD-seq
Methylation
MACS
MACS2
R
updated 6.2 years ago by
yinzl2007
▴ 20 • written 6.4 years ago by
pm2012
▴ 130
0
votes
0
replies
1.9k
views
Error processing Illumina 450K Methylation data using Minfi
minfi
bioconductor
methylation
R
6.5 years ago by
pm2012
▴ 130
0
votes
0
replies
2.1k
views
Single channel analysis of two-color agilent array using limma
Forum
microarray
agilent
limma
6.8 years ago by
pm2012
▴ 130
15
votes
6
replies
6.3k
views
Forum:
What to look for in a potential postdoc?
Postdoc
genomics
Forum
updated 8 months ago by
Ram
36k • written 8.0 years ago by
pm2012
▴ 130
0
votes
0
replies
6.3k
views
Comment:
Comment: What to look for in a potential postdoc?
updated 8 months ago by
Ram
36k • written 8.0 years ago by
pm2012
▴ 130
4
votes
0
replies
3.0k
views
Validation of Splicing Results from cufflinks-cuffdiff pipeline
cuffdiff
RNA-Seq
splicing
validation
DEXSeq
updated 9 months ago by
Ram
36k • written 8.2 years ago by
pm2012
▴ 130
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