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4
votes
4
replies
8.7k
views
Answer: A: confusion in the DeBruijn Graph
updated 5.8 years ago by 45k • written 9.7 years ago by 7.2k
0
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1
reply
9.1k
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Comment: C: TPM or FPKM as input values for PCA and WGCNA?
updated 5.8 years ago by 45k • written 9.8 years ago by 7.2k
3
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1
reply
5.3k
views
Comment: C: best workflow for RNA data analysis without replications
updated 5.8 years ago by 45k • written 9.8 years ago by 7.2k
2
votes
0
replies
9.1k
views
Answer: A: TPM or FPKM as input values for PCA and WGCNA?
updated 5.9 years ago by 45k • written 9.8 years ago by 7.2k
0
votes
1
reply
3.3k
views
Answer: A: Why is cuffdiff only returning insignificant differences?
updated 5.9 years ago by 45k • written 11.5 years ago by 7.2k
2
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1
reply
3.2k
views
Answer: A: Can pairwise global alignment be done in linear memory with affine gap penalties
updated 5.9 years ago by 45k • written 9.8 years ago by 7.2k
7
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2
replies
69k
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Answer: A: Calculating TPM from featureCounts output
updated 5.9 years ago by 45k • written 9.8 years ago by 7.2k
0
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1
reply
1.6k
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Comment: C: Issue with index creation in RapMap
5.9 years ago by Rob 7.2k
0
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0
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5.0k
views
Comment: C: Microarray and RNA-seq different result
updated 5.9 years ago by 45k • written 9.9 years ago by 7.2k
0
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1
reply
23k
views
Comment: C: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
updated 5.9 years ago by 45k • written 9.9 years ago by 7.2k
0
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0
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4.2k
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Comment: C: finding reads from fastq files corresponds to particular transcript from fasta f
updated 5.9 years ago by 45k • written 9.9 years ago by 7.2k
1
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0
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3.2k
views
Answer: A: what's the best kmer size for sailfish
updated 5.9 years ago by 45k • written 10.0 years ago by 7.2k
0
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0
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5.5k
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Comment: C: Salmon warning detected suspicious pair
updated 5.9 years ago by 45k • written 10.0 years ago by 7.2k
0
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1
reply
5.5k
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Comment: C: Salmon warning detected suspicious pair
updated 5.9 years ago by 45k • written 10.0 years ago by 7.2k
0
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0
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21k
views
Comment: C: Is There Any Other Method For Isoform-Level Differential Expression Analysis Exc
updated 6.0 years ago by 45k • written 10.0 years ago by 7.2k
5
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1
reply
3.7k
views
Answer: A: How to handle Reverse complement in De-Bruijn Graph
updated 6.0 years ago by 45k • written 10.1 years ago by 7.2k
0
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0
replies
9.3k
views
Comment: Comment: Salmon: A fast and versatile new tool for RNA-seq quantification
updated 3.6 years ago by 45k • written 10.1 years ago by 7.2k
0
votes
0
replies
5.0k
views
Comment: C: Salmon error message
6.0 years ago by Rob 7.2k
6
votes
9
replies
7.6k
views
Keeping paired reads together when sorting BAM file by name
alignment next-gen RNA-Seq
updated 3.6 years ago by 45k • written 10.7 years ago by 7.2k
0
votes
0
replies
19k
views
Comment: C: Fragment Size: TLEN vs. isize
updated 6.1 years ago by 45k • written 11.3 years ago by 7.2k
18
votes
1
reply
42k
views
Answer: C: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
updated 6.1 years ago by 154k • written 6.1 years ago by 7.2k
3
votes
0
replies
1.0k
views
News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 2.4 years ago by 45k • written 6.1 years ago by 7.2k
0
votes
0
replies
7.6k
views
Comment: C: Python Program to read .fasta file to .txt file
6.1 years ago by Rob 7.2k
2
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1
reply
3.9k
views
Comment: C: Merging the output of salmon for RNA-seq counting with paired-end and single-end
6.2 years ago by Rob 7.2k
0
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1
reply
1.7k
views
Comment: C: inconsistent results of rsem quantification
6.2 years ago by Rob 7.2k
2
votes
0
replies
1.7k
views
Answer: A: Does salmon use phred scores while pseudoaligning (and/or validating mapping)?
6.5 years ago by Rob 7.2k
1
vote
1
reply
2.7k
views
Answer: C: do paired end reads both mapped to the same gene appear consecutive to each othe
6.6 years ago by Rob 7.2k
6
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0
replies
6.4k
views
Answer: C: Salmon (quant.sf) to txtimport
6.6 years ago by Rob 7.2k
0
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1
reply
8.1k
views
Comment: C: Understanding salmon codes
6.6 years ago by Rob 7.2k
0
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1
reply
8.1k
views
Comment: C: Understanding salmon codes
6.6 years ago by Rob 7.2k
1
vote
1
reply
8.1k
views
Comment: C: Understanding salmon codes
6.6 years ago by Rob 7.2k
1
vote
1
reply
8.1k
views
Comment: C: Understanding salmon codes
6.6 years ago by Rob 7.2k
2
votes
1
reply
8.1k
views
Comment: C: Understanding salmon codes
6.6 years ago by Rob 7.2k
3
votes
1
reply
8.1k
views
Answer: C: Understanding salmon codes
6.6 years ago by Rob 7.2k
0
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1
reply
9.5k
views
Comment: C: Salmon transcriptome generation
6.6 years ago by Rob 7.2k
7
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3
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9.5k
views
Answer: A: Salmon transcriptome generation
6.6 years ago by Rob 7.2k
0
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0
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5.8k
views
Comment: C: Salmon Counts differ in Alignment and Quasi-Mapping mode
6.7 years ago by Rob 7.2k
5
votes
2
replies
5.8k
views
Answer: A: Salmon Counts differ in Alignment and Quasi-Mapping mode
6.7 years ago by Rob 7.2k
2
votes
1
reply
9.4k
views
Comment: C: How to change cellranger multimapping algorithm
6.7 years ago by Rob 7.2k
3
votes
0
replies
3.8k
views
Answer: C: RNA-Seq:How to know RNA-seq data is Strand-Specific or not based on only fastq
updated 6.8 years ago by 89k • written 6.8 years ago by 7.2k
5
votes
2
replies
9.4k
views
Answer: A: How to change cellranger multimapping algorithm
6.8 years ago by Rob 7.2k
4
votes
2
replies
3.5k
views
Answer: A: Average Insert Size When Using Transcript Quantification Tools Such as Salmon?
7.0 years ago by Rob 7.2k
1
vote
2
replies
5.0k
views
Comment: C: best pipeline to get gene and transcript counts
7.0 years ago by Rob 7.2k
1
vote
1
reply
5.0k
views
Comment: C: best pipeline to get gene and transcript counts
7.0 years ago by Rob 7.2k
1
vote
1
reply
5.0k
views
Comment: C: best pipeline to get gene and transcript counts
7.0 years ago by Rob 7.2k
0
votes
2
replies
5.0k
views
Comment: C: best pipeline to get gene and transcript counts
7.0 years ago by Rob 7.2k
0
votes
1
reply
5.0k
views
Comment: C: best pipeline to get gene and transcript counts
7.0 years ago by Rob 7.2k
1
vote
1
reply
5.9k
views
Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
7.0 years ago by Rob 7.2k
1
vote
2
replies
5.9k
views
Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
7.0 years ago by Rob 7.2k
1
vote
1
reply
5.9k
views
Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
7.0 years ago by Rob 7.2k
367 results • Page 4 of 8
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