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What are the risque of keeping variants which read have low mapping quality?
gatk mutect2 bwa variant-calling
updated 8 months ago by 45k • written 8 months ago by ▴ 120
5
votes
2
replies
1.9k
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Nextflow: how to filter a channel by a list? (DLS2)
dsl2 nextflow
updated 9 months ago by ▴ 10 • written 2.2 years ago by ▴ 120
0
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0
replies
749
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Comment: Comment: Calling zero mapping quality variant
2.6 years ago by lacb ▴ 120
2
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0
replies
1.3k
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Answer: Answer: Visualise a variant position in a gene
2.6 years ago by lacb ▴ 120
0
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0
replies
772
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Comment: Comment: ValueError: not enough values to unpack (expected 2, got 1)
2.6 years ago by lacb ▴ 120
0
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1
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4.7k
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Comment: Comment: What specifications of laptop should I buy for bioinformatics?
2.6 years ago by lacb ▴ 120
3
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1
reply
4.7k
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Answer: Answer: What specifications of laptop should I buy for bioinformatics?
2.6 years ago by lacb ▴ 120
0
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1
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1.6k
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Answer: Answer: GATK 4.3 configuration
2.6 years ago by lacb ▴ 120
0
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0
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1.8k
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Answer: Answer: extract pattern using grep/sed
2.6 years ago by lacb ▴ 120
4
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0
replies
1.1k
views
Answer: Answer: Eplanation about some code
2.6 years ago by lacb ▴ 120
1
vote
1
reply
896
views
bwa mem duration?
performance mapping bwa
updated 2.7 years ago by 89k • written 2.7 years ago by ▴ 120
3
votes
3
replies
2.1k
views
How to remove reads with no mate? (ERROR:MATE_NOT_FOUND)
bam samtools gatk
updated 23 months ago by • 0 • written 2.7 years ago by ▴ 120
1
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1
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2.1k
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Answer: Answer: How to remove reads with no mate? (ERROR:MATE_NOT_FOUND)
2.7 years ago by lacb ▴ 120
4
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1
reply
1.2k
views
Why some reads have MAPQ = 0 with bwa and look good?
alignment mapq bwa maping
updated 2.8 years ago by ▴ 360 • written 2.8 years ago by ▴ 120
0
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0
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3.7k
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Comment: Comment: What sequencing/alignment artifact is this?
2.9 years ago by lacb ▴ 120
0
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0
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3.7k
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Comment: Comment: What sequencing/alignment artifact is this?
3.0 years ago by lacb ▴ 120
0
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0
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3.7k
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Comment: Comment: What sequencing/alignment artifact is this?
3.0 years ago by lacb ▴ 120
0
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0
replies
3.7k
views
Comment: Comment: What sequencing/alignment artifact is this?
3.0 years ago by lacb ▴ 120
0
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1
reply
3.7k
views
Comment: Comment: What sequencing/alignment artifact is this?
3.0 years ago by lacb ▴ 120
0
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2
replies
3.7k
views
Comment: Comment: What sequencing/alignment artifact is this?
3.0 years ago by lacb ▴ 120
0
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1
reply
3.7k
views
Comment: Comment: What sequencing/alignment artifact is this?
3.0 years ago by lacb ▴ 120
1
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1
reply
3.7k
views
Comment: Comment: What sequencing/alignment artifact is this?
3.0 years ago by lacb ▴ 120
3
votes
18
replies
3.7k
views
6 follow
What sequencing/alignment artifact is this?
variants mutect sequencing alignment mitochondria
2.9 years ago by lacb ▴ 120
23 results • Page 1 of 1
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