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Comment: Comment: How do I load a peak file in ChIPseeker?
6 weeks ago by e.r.zakiev ▴ 230
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Comment: Comment: associate GO ID with GO description
4 months ago by e.r.zakiev ▴ 230
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408
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Answer: Answer: Problem in RNASeq data analysis
4 months ago by e.r.zakiev ▴ 230
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1.7k
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Comment: Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
5 months ago by e.r.zakiev ▴ 230
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Comment: Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
6 months ago by e.r.zakiev ▴ 230
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970
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
6 months ago by e.r.zakiev ▴ 230
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970
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Very low RNA splicing rate for pulmonary AT2 cells
RNA-velocity scVelo scRNA-seq splicing
6 months ago by e.r.zakiev ▴ 230
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970
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Answer: Answer: Very low RNA splicing rate for pulmonary AT2 cells
6 months ago by e.r.zakiev ▴ 230
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1.5k
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Comment: Comment: Classifying repeat features from Ensembl
6 months ago by e.r.zakiev ▴ 230
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7.6k
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Comment: Comment: Repeat masked gtf files from ensembl
7 months ago by e.r.zakiev ▴ 230
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7.6k
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Comment: Comment: Repeat masked gtf files from ensembl
7 months ago by e.r.zakiev ▴ 230
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1
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7.6k
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Comment: Comment: Repeat masked gtf files from ensembl
7 months ago by e.r.zakiev ▴ 230
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1.5k
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Comment: Comment: Classifying repeat features from Ensembl
7 months ago by e.r.zakiev ▴ 230
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7.6k
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Comment: Comment: Repeat masked gtf files from ensembl
7 months ago by e.r.zakiev ▴ 230
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970
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
7 months ago by e.r.zakiev ▴ 230
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1
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970
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
updated 7 months ago by 44k • written 7 months ago by ▴ 230
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858
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Comment: Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
7 months ago by e.r.zakiev ▴ 230
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1.7k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
7 months ago by e.r.zakiev ▴ 230
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1.7k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
7 months ago by e.r.zakiev ▴ 230
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2
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858
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Applicability of the SoupX ambient mRNA decontamination technique to fixed and/or multiplexed scRNAseq experiments
SoupX scRNA-seq
7 months ago by e.r.zakiev ▴ 230
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2.4k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
9 months ago by e.r.zakiev ▴ 230
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2.4k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
9 months ago by e.r.zakiev ▴ 230
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2.4k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
9 months ago by e.r.zakiev ▴ 230
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1
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561
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Data scaling in single-cell RNAseq - sample-wise or on the full set?
scRNA-seq seurat
updated 9 months ago by ★ 3.0k • written 9 months ago by ▴ 230
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2.4k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
9 months ago by e.r.zakiev ▴ 230
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5.7k
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Comment: Comment: How long it takes to run repeat masker on a full genome
9 months ago by e.r.zakiev ▴ 230
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1
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5.7k
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Comment: Comment: How long it takes to run repeat masker on a full genome
9 months ago by e.r.zakiev ▴ 230
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804
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Comment: Comment: Single-cell RNA-seq: Preprocessing: Clustering space and evaluation
9 months ago by e.r.zakiev ▴ 230
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11k
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Comment: Comment: best way to visualize bam file
9 months ago by e.r.zakiev ▴ 230
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995
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Comment: Comment: from fasta to gtf format?
10 months ago by e.r.zakiev ▴ 230
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23k
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Comment: Comment: how do I run repeat masker
10 months ago by e.r.zakiev ▴ 230
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7.6k
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Comment: Comment: Repeat masked gtf files from ensembl
10 months ago by e.r.zakiev ▴ 230
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1.8k
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Comment: Comment: How to get the gft file to run velocyto for velocity analysis?
10 months ago by e.r.zakiev ▴ 230
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1.3k
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Comment: Comment: Why runing scDblFinder before and after removing low QC cells gives different re
11 months ago by e.r.zakiev ▴ 230
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307
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cNMF vs LIGER
NMF correction batch
11 months ago by e.r.zakiev ▴ 230
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2.6k
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Comment: Comment: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
11 months ago by e.r.zakiev ▴ 230
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443
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P-value for comparing GSVA scores
GSVA
updated 12 months ago by 44k • written 12 months ago by ▴ 230
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620
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Comment: Comment: Which embedding for clustering of cells in single-cell RNAseq?
12 months ago by e.r.zakiev ▴ 230
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3.5k
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Comment: Comment: Clustering in single cell
12 months ago by e.r.zakiev ▴ 230
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2
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620
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Which embedding for clustering of cells in single-cell RNAseq?
tSNE ICA clustering PCA UMAP
12 months ago by e.r.zakiev ▴ 230
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1.6k
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Answer: Answer: Cluster annotation in single cell
12 months ago by e.r.zakiev ▴ 230
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3.5k
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Comment: Comment: Clustering in single cell
12 months ago by e.r.zakiev ▴ 230
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3.5k
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Comment: Comment: Clustering in single cell
12 months ago by e.r.zakiev ▴ 230
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3.5k
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Comment: Comment: Clustering in single cell
12 months ago by e.r.zakiev ▴ 230
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2.5k
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Comment: Comment: Clustering resolution single-cell RNA-seq
12 months ago by e.r.zakiev ▴ 230
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3.2k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
13 months ago by e.r.zakiev ▴ 230
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1.6k
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Comment: Comment: Good alignment rate for DNA-seq data
13 months ago by e.r.zakiev ▴ 230
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1
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3.2k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
13 months ago by e.r.zakiev ▴ 230
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3.2k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
13 months ago by e.r.zakiev ▴ 230
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1.2k
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Answer: Answer: How to decide what gene set libraries to use in your GSEA analysis
13 months ago by e.r.zakiev ▴ 230
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