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Comment: Comment: Classifying repeat features from Ensembl
10 days ago by e.r.zakiev ▴ 200
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6.4k
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Comment: Comment: Repeat masked gtf files from ensembl
14 days ago by e.r.zakiev ▴ 200
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1
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6.4k
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Comment: Comment: Repeat masked gtf files from ensembl
15 days ago by e.r.zakiev ▴ 200
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1
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6.4k
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Comment: Comment: Repeat masked gtf files from ensembl
20 days ago by e.r.zakiev ▴ 200
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1
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1.2k
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Comment: Comment: Classifying repeat features from Ensembl
20 days ago by e.r.zakiev ▴ 200
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6.4k
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Comment: Comment: Repeat masked gtf files from ensembl
20 days ago by e.r.zakiev ▴ 200
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408
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
22 days ago by e.r.zakiev ▴ 200
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408
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
updated 22 days ago by 43k • written 22 days ago by ▴ 200
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408
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Very low RNA splicing rate for pulmonary AT2 cells
RNA-velocity scVelo scRNA-seq splicing
updated 22 days ago by 141k • written 23 days ago by ▴ 200
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589
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Comment: Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
5 weeks ago by e.r.zakiev ▴ 200
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1.4k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
5 weeks ago by e.r.zakiev ▴ 200
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
5 weeks ago by e.r.zakiev ▴ 200
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2
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589
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Applicability of the SoupX ambient mRNA decontamination technique to fixed and/or multiplexed scRNAseq experiments
SoupX scRNA-seq
5 weeks ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
11 weeks ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
12 weeks ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
12 weeks ago by e.r.zakiev ▴ 200
2
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1
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275
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Data scaling in single-cell RNAseq - sample-wise or on the full set?
scRNA-seq seurat
updated 12 weeks ago by ★ 2.3k • written 12 weeks ago by ▴ 200
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1
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1.5k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
12 weeks ago by e.r.zakiev ▴ 200
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5.2k
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Comment: Comment: How long it takes to run repeat masker on a full genome
3 months ago by e.r.zakiev ▴ 200
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1
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5.2k
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Comment: Comment: How long it takes to run repeat masker on a full genome
3 months ago by e.r.zakiev ▴ 200
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401
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Comment: Comment: Single-cell RNA-seq: Preprocessing: Clustering space and evaluation
3 months ago by e.r.zakiev ▴ 200
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9.8k
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Comment: Comment: best way to visualize bam file
3 months ago by e.r.zakiev ▴ 200
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862
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Comment: Comment: from fasta to gtf format?
3 months ago by e.r.zakiev ▴ 200
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1
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21k
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Comment: Comment: how do I run repeat masker
3 months ago by e.r.zakiev ▴ 200
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1
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6.4k
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Comment: Comment: Repeat masked gtf files from ensembl
3 months ago by e.r.zakiev ▴ 200
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1.1k
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Comment: Comment: How to get the gft file to run velocyto for velocity analysis?
3 months ago by e.r.zakiev ▴ 200
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879
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Comment: Comment: Why runing scDblFinder before and after removing low QC cells gives different re
5 months ago by e.r.zakiev ▴ 200
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198
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cNMF vs LIGER
NMF correction batch
5 months ago by e.r.zakiev ▴ 200
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2.4k
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Comment: Comment: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
5 months ago by e.r.zakiev ▴ 200
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349
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P-value for comparing GSVA scores
GSVA
updated 6 months ago by 43k • written 6 months ago by ▴ 200
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423
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Comment: Comment: Which embedding for clustering of cells in single-cell RNAseq?
6 months ago by e.r.zakiev ▴ 200
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2.2k
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Comment: Comment: Clustering in single cell
6 months ago by e.r.zakiev ▴ 200
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2
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423
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Which embedding for clustering of cells in single-cell RNAseq?
tSNE ICA clustering PCA UMAP
6 months ago by e.r.zakiev ▴ 200
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1.0k
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Answer: Answer: Cluster annotation in single cell
6 months ago by e.r.zakiev ▴ 200
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2.2k
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Comment: Comment: Clustering in single cell
6 months ago by e.r.zakiev ▴ 200
1
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0
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2.2k
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Comment: Comment: Clustering in single cell
6 months ago by e.r.zakiev ▴ 200
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1
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2.2k
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Comment: Comment: Clustering in single cell
6 months ago by e.r.zakiev ▴ 200
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2.3k
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Comment: Comment: Clustering resolution single-cell RNA-seq
6 months ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
6 months ago by e.r.zakiev ▴ 200
1
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1.1k
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Comment: Comment: Good alignment rate for DNA-seq data
6 months ago by e.r.zakiev ▴ 200
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1
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1.5k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
6 months ago by e.r.zakiev ▴ 200
1
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0
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1.5k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
6 months ago by e.r.zakiev ▴ 200
1
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602
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Answer: Answer: How to decide what gene set libraries to use in your GSEA analysis
6 months ago by e.r.zakiev ▴ 200
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602
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Comment: Comment: How to decide what gene set libraries to use in your GSEA analysis
6 months ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
6 months ago by e.r.zakiev ▴ 200
15
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7
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1.5k
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When should I NOT apply batch correction for my single-cell RNAseq data?
scRNA-seq batch-correction
updated 6 months ago by 43k • written 6 months ago by ▴ 200
3
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2
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1.1k
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Answer: Answer: Good alignment rate for DNA-seq data
6 months ago by e.r.zakiev ▴ 200
0
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1
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579
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Comment: Comment: Cloud Computing w.r.t. AWS, Google Cloud, Microsoft Azure
6 months ago by e.r.zakiev ▴ 200
1
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0
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1.2k
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Comment: Comment: remove batch effect
6 months ago by e.r.zakiev ▴ 200
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0
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1.3k
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Comment: Comment: Why is chromHMM's binarizeBed with the -peaks argument not recommended for broad
7 months ago by e.r.zakiev ▴ 200
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