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Comment: Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
4 days ago by e.r.zakiev ▴ 210
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1.8k
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Comment: Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
17 days ago by e.r.zakiev ▴ 210
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641
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
21 days ago by e.r.zakiev ▴ 210
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7
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641
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Very low RNA splicing rate for pulmonary AT2 cells
RNA-velocity scVelo scRNA-seq splicing
21 days ago by e.r.zakiev ▴ 210
1
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1
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641
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Answer: Answer: Very low RNA splicing rate for pulmonary AT2 cells
21 days ago by e.r.zakiev ▴ 210
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1.3k
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Comment: Comment: Classifying repeat features from Ensembl
5 weeks ago by e.r.zakiev ▴ 210
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6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
5 weeks ago by e.r.zakiev ▴ 210
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1
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6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
5 weeks ago by e.r.zakiev ▴ 210
0
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1
reply
6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
6 weeks ago by e.r.zakiev ▴ 210
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1
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1.3k
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Comment: Comment: Classifying repeat features from Ensembl
6 weeks ago by e.r.zakiev ▴ 210
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0
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6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
6 weeks ago by e.r.zakiev ▴ 210
0
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0
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641
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
6 weeks ago by e.r.zakiev ▴ 210
0
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1
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641
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
updated 6 weeks ago by 43k • written 6 weeks ago by ▴ 210
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636
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Comment: Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
8 weeks ago by e.r.zakiev ▴ 210
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0
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1.4k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
8 weeks ago by e.r.zakiev ▴ 210
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0
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1.4k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
8 weeks ago by e.r.zakiev ▴ 210
1
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2
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636
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Applicability of the SoupX ambient mRNA decontamination technique to fixed and/or multiplexed scRNAseq experiments
SoupX scRNA-seq
8 weeks ago by e.r.zakiev ▴ 210
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0
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1.6k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
3 months ago by e.r.zakiev ▴ 210
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1
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1.6k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
3 months ago by e.r.zakiev ▴ 210
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0
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1.6k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
3 months ago by e.r.zakiev ▴ 210
2
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1
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311
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Data scaling in single-cell RNAseq - sample-wise or on the full set?
scRNA-seq seurat
updated 3 months ago by ★ 2.5k • written 3 months ago by ▴ 210
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1
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1.6k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
3 months ago by e.r.zakiev ▴ 210
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0
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5.3k
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Comment: Comment: How long it takes to run repeat masker on a full genome
4 months ago by e.r.zakiev ▴ 210
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1
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5.3k
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Comment: Comment: How long it takes to run repeat masker on a full genome
4 months ago by e.r.zakiev ▴ 210
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484
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Comment: Comment: Single-cell RNA-seq: Preprocessing: Clustering space and evaluation
4 months ago by e.r.zakiev ▴ 210
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10.0k
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Comment: Comment: best way to visualize bam file
4 months ago by e.r.zakiev ▴ 210
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0
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884
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Comment: Comment: from fasta to gtf format?
4 months ago by e.r.zakiev ▴ 210
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1
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21k
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Comment: Comment: how do I run repeat masker
4 months ago by e.r.zakiev ▴ 210
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1
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6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
4 months ago by e.r.zakiev ▴ 210
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1.2k
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Comment: Comment: How to get the gft file to run velocyto for velocity analysis?
4 months ago by e.r.zakiev ▴ 210
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932
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Comment: Comment: Why runing scDblFinder before and after removing low QC cells gives different re
5 months ago by e.r.zakiev ▴ 210
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0
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209
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cNMF vs LIGER
NMF correction batch
6 months ago by e.r.zakiev ▴ 210
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2.5k
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Comment: Comment: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
6 months ago by e.r.zakiev ▴ 210
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0
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356
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P-value for comparing GSVA scores
GSVA
updated 7 months ago by 43k • written 7 months ago by ▴ 210
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452
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Comment: Comment: Which embedding for clustering of cells in single-cell RNAseq?
7 months ago by e.r.zakiev ▴ 210
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2.4k
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Comment: Comment: Clustering in single cell
7 months ago by e.r.zakiev ▴ 210
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2
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452
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Which embedding for clustering of cells in single-cell RNAseq?
tSNE ICA clustering PCA UMAP
7 months ago by e.r.zakiev ▴ 210
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0
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1.1k
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Answer: Answer: Cluster annotation in single cell
7 months ago by e.r.zakiev ▴ 210
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0
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2.4k
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Comment: Comment: Clustering in single cell
7 months ago by e.r.zakiev ▴ 210
1
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0
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2.4k
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Comment: Comment: Clustering in single cell
7 months ago by e.r.zakiev ▴ 210
0
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1
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2.4k
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Comment: Comment: Clustering in single cell
7 months ago by e.r.zakiev ▴ 210
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0
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2.3k
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Comment: Comment: Clustering resolution single-cell RNA-seq
7 months ago by e.r.zakiev ▴ 210
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0
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1.7k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
7 months ago by e.r.zakiev ▴ 210
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0
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1.2k
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Comment: Comment: Good alignment rate for DNA-seq data
7 months ago by e.r.zakiev ▴ 210
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1
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1.7k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
7 months ago by e.r.zakiev ▴ 210
1
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0
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1.7k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
7 months ago by e.r.zakiev ▴ 210
1
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0
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677
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Answer: Answer: How to decide what gene set libraries to use in your GSEA analysis
7 months ago by e.r.zakiev ▴ 210
1
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0
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677
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Comment: Comment: How to decide what gene set libraries to use in your GSEA analysis
7 months ago by e.r.zakiev ▴ 210
3
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0
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1.7k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
7 months ago by e.r.zakiev ▴ 210
16
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7
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1.7k
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When should I NOT apply batch correction for my single-cell RNAseq data?
scRNA-seq batch-correction
updated 7 months ago by 43k • written 7 months ago by ▴ 210
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