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Comment: Comment: Nebula 30x read length distribution
21 months ago by berndmann ▴ 10
1
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3
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709
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Nebula 30x read length distribution
Illumina nebula.WGS 30x
updated 21 months ago by 150k • written 21 months ago by ▴ 10
0
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1
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2.7k
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Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
21 months ago by berndmann ▴ 10
0
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1
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2.7k
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Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
21 months ago by berndmann ▴ 10
0
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0
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2.7k
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Comment: Comment: Simulate reads for positions in a vcf file
21 months ago by berndmann ▴ 10
0
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1
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2.7k
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Comment: Comment: Simulate reads for positions in a vcf file
21 months ago by berndmann ▴ 10
3
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16
replies
2.7k
views
Simulate reads for positions in a vcf file
variant-calling simulation bam vcf
updated 18 months ago by 20k • written 22 months ago by ▴ 10
0
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1
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2.7k
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Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
21 months ago by berndmann ▴ 10
0
votes
1
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2.7k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
21 months ago by berndmann ▴ 10
0
votes
1
reply
2.7k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
21 months ago by berndmann ▴ 10
3
votes
1
reply
1.1k
views
Use bbmap reformat.sh to convert from paired fq files to a bam file
reformat.sh bbmap
21 months ago by berndmann ▴ 10
0
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0
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2.7k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
22 months ago by berndmann ▴ 10
0
votes
1
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2.7k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
22 months ago by berndmann ▴ 10
0
votes
1
reply
2.7k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
22 months ago by berndmann ▴ 10
1
vote
20
replies
2.7k
views
randomreads.sh only produces reads for chr1 to chr7
randomreads.sh bbmap
updated 21 months ago by 150k • written 22 months ago by ▴ 10
0
votes
1
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2.7k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
21 months ago by berndmann ▴ 10
0
votes
1
reply
2.7k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
21 months ago by berndmann ▴ 10
0
votes
1
reply
2.7k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
22 months ago by berndmann ▴ 10
0
votes
1
reply
2.7k
views
Comment: Comment: Simulate reads for positions in a vcf file
22 months ago by berndmann ▴ 10
0
votes
1
reply
2.7k
views
Comment: Comment: Simulate reads for positions in a vcf file
22 months ago by berndmann ▴ 10
0
votes
1
reply
2.7k
views
Comment: Comment: Simulate reads for positions in a vcf file
22 months ago by berndmann ▴ 10
0
votes
1
reply
2.7k
views
Comment: Comment: Simulate reads for positions in a vcf file
22 months ago by berndmann ▴ 10
0
votes
1
reply
2.7k
views
Comment: Comment: Simulate reads for positions in a vcf file
22 months ago by berndmann ▴ 10
0
votes
1
reply
2.7k
views
Comment: Comment: Simulate reads for positions in a vcf file
22 months ago by berndmann ▴ 10
0
votes
0
replies
2.7k
views
Answer: Answer: Simulate reads for positions in a vcf file
22 months ago by berndmann ▴ 10
0
votes
0
replies
17k
views
Comment: Comment: vcf to bam
22 months ago by berndmann ▴ 10
0
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0
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1.2k
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Comment: Comment: Chain file for Homo_sapiens_assembly38.fasta to liftover Nebula vcf
22 months ago by berndmann ▴ 10
0
votes
2
replies
1.2k
views
Chain file for Homo_sapiens_assembly38.fasta to liftover Nebula vcf
hg38 fasta hg19 chainfile
22 months ago by berndmann ▴ 10
0
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0
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3.0k
views
Comment: Comment: Noob question. Samtools says my CRAM from Nebula is wonky, what can I do?
23 months ago by berndmann ▴ 10
0
votes
1
reply
1.3k
views
Low SNP Overlap with Michigan 1KG and TopMed reference panel
Michigan-Server Phasing TopMed
updated 12 months ago by 45k • written 23 months ago by ▴ 10
0
votes
0
replies
641
views
Small overlap of 1KG Sample file with dbSNP and same sample from phased file
HaploTypeCaller 1KG dbSNP
2.0 years ago by berndmann ▴ 10
0
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1
reply
1.1k
views
Comment: Comment: Can't call subsampled bam file with GATK Haplotypecaller with --disable-tool-def
2.0 years ago by berndmann ▴ 10
0
votes
4
replies
1.1k
views
Can't call subsampled bam file with GATK Haplotypecaller with --disable-tool-default-read-filters
ultra-low-coverage GATK HaplotypeCaller
updated 2.0 years ago by 166k • written 2.0 years ago by ▴ 10
1
vote
2
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2.4k
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Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
2.3 years ago by berndmann ▴ 10
2
votes
8
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2.4k
views
High ref mismatch rate after liftOver from 23andme hg19 to hg38
liftOver plink 23andme bcftools-fixref
updated 22 months ago by 45k • written 2.3 years ago by ▴ 10
0
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1
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2.4k
views
Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
2.3 years ago by berndmann ▴ 10
1
vote
4
replies
2.1k
views
Convert plink format to genotype input format
genotype plink
updated 21 months ago by 45k • written 2.4 years ago by ▴ 10
1
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0
replies
2.1k
views
Answer: Answer: Convert plink format to genotype input format
2.4 years ago by berndmann ▴ 10
0
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0
replies
2.1k
views
Comment: Comment: Convert plink format to genotype input format
2.4 years ago by berndmann ▴ 10
0
votes
1
reply
2.1k
views
Comment: Comment: Convert plink format to genotype input format
2.4 years ago by berndmann ▴ 10
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