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Comment: Comment: Nebula 30x read length distribution
13 months ago by berndmann ▴ 10
1
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3
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556
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Nebula 30x read length distribution
Illumina nebula.WGS 30x
updated 13 months ago by 145k • written 13 months ago by ▴ 10
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1.9k
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Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
13 months ago by berndmann ▴ 10
0
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1
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1.9k
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Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
13 months ago by berndmann ▴ 10
0
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0
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2.0k
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Comment: Comment: Simulate reads for positions in a vcf file
13 months ago by berndmann ▴ 10
0
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1
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2.0k
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Comment: Comment: Simulate reads for positions in a vcf file
13 months ago by berndmann ▴ 10
3
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16
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2.0k
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Simulate reads for positions in a vcf file
variant-calling simulation bam vcf
updated 10 months ago by 20k • written 14 months ago by ▴ 10
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1
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1.9k
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Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
13 months ago by berndmann ▴ 10
0
votes
1
reply
1.9k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
13 months ago by berndmann ▴ 10
0
votes
1
reply
1.9k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
13 months ago by berndmann ▴ 10
3
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1
reply
685
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Use bbmap reformat.sh to convert from paired fq files to a bam file
reformat.sh bbmap
14 months ago by berndmann ▴ 10
0
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0
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1.9k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
14 months ago by berndmann ▴ 10
0
votes
1
reply
1.9k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
14 months ago by berndmann ▴ 10
0
votes
1
reply
1.9k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
14 months ago by berndmann ▴ 10
1
vote
20
replies
1.9k
views
randomreads.sh only produces reads for chr1 to chr7
randomreads.sh bbmap
updated 13 months ago by 145k • written 14 months ago by ▴ 10
0
votes
1
reply
1.9k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
13 months ago by berndmann ▴ 10
0
votes
1
reply
1.9k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
13 months ago by berndmann ▴ 10
0
votes
1
reply
1.9k
views
Comment: Comment: randomreads.sh only produces reads for chr1 to chr7
14 months ago by berndmann ▴ 10
0
votes
1
reply
2.0k
views
Comment: Comment: Simulate reads for positions in a vcf file
14 months ago by berndmann ▴ 10
0
votes
1
reply
2.0k
views
Comment: Comment: Simulate reads for positions in a vcf file
14 months ago by berndmann ▴ 10
0
votes
1
reply
2.0k
views
Comment: Comment: Simulate reads for positions in a vcf file
14 months ago by berndmann ▴ 10
0
votes
1
reply
2.0k
views
Comment: Comment: Simulate reads for positions in a vcf file
14 months ago by berndmann ▴ 10
0
votes
1
reply
2.0k
views
Comment: Comment: Simulate reads for positions in a vcf file
14 months ago by berndmann ▴ 10
0
votes
1
reply
2.0k
views
Comment: Comment: Simulate reads for positions in a vcf file
14 months ago by berndmann ▴ 10
0
votes
0
replies
2.0k
views
Answer: Answer: Simulate reads for positions in a vcf file
14 months ago by berndmann ▴ 10
0
votes
0
replies
16k
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Comment: Comment: vcf to bam
14 months ago by berndmann ▴ 10
0
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0
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897
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Comment: Comment: Chain file for Homo_sapiens_assembly38.fasta to liftover Nebula vcf
15 months ago by berndmann ▴ 10
0
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2
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897
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Chain file for Homo_sapiens_assembly38.fasta to liftover Nebula vcf
hg38 fasta hg19 chainfile
15 months ago by berndmann ▴ 10
0
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0
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2.0k
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Comment: Comment: Noob question. Samtools says my CRAM from Nebula is wonky, what can I do?
15 months ago by berndmann ▴ 10
0
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1
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965
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Low SNP Overlap with Michigan 1KG and TopMed reference panel
Michigan-Server Phasing TopMed
updated 5 months ago by 44k • written 16 months ago by ▴ 10
0
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0
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481
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Small overlap of 1KG Sample file with dbSNP and same sample from phased file
HaploTypeCaller 1KG dbSNP
17 months ago by berndmann ▴ 10
0
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1
reply
854
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Comment: Comment: Can't call subsampled bam file with GATK Haplotypecaller with --disable-tool-def
17 months ago by berndmann ▴ 10
0
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4
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854
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Can't call subsampled bam file with GATK Haplotypecaller with --disable-tool-default-read-filters
ultra-low-coverage GATK HaplotypeCaller
updated 17 months ago by 163k • written 17 months ago by ▴ 10
1
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2
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1.9k
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Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
19 months ago by berndmann ▴ 10
2
votes
8
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1.9k
views
High ref mismatch rate after liftOver from 23andme hg19 to hg38
liftOver plink 23andme bcftools-fixref
updated 14 months ago by 44k • written 19 months ago by ▴ 10
0
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1
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1.9k
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Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
19 months ago by berndmann ▴ 10
1
vote
4
replies
1.6k
views
Convert plink format to genotype input format
genotype plink
updated 13 months ago by 44k • written 21 months ago by ▴ 10
1
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0
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1.6k
views
Answer: Answer: Convert plink format to genotype input format
21 months ago by berndmann ▴ 10
0
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0
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1.6k
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Comment: Comment: Convert plink format to genotype input format
21 months ago by berndmann ▴ 10
0
votes
1
reply
1.6k
views
Comment: Comment: Convert plink format to genotype input format
21 months ago by berndmann ▴ 10
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