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questions
3
votes
0
replies
974
views
Data integration tools for multi-omics sequencing data
RNA-Seq
ChIP-Seq
sequencing
next-gen
4.0 years ago by
marina.v.yurieva
▴ 580
3
votes
2
replies
2.3k
views
StringTie --merge creates the same id for neighbouring genes
stringtie
ensembl
gene assembly
updated 3.7 years ago by
PeiwenLi
• 0 • written 5.5 years ago by
marina.v.yurieva
▴ 580
0
votes
3
replies
1.3k
views
Stringtie --merge with PE and SE files
assembly
bam
5.6 years ago by
marina.v.yurieva
▴ 580
7
votes
8
replies
3.4k
views
Stranded RNA-seq data visualization in UCSC
RNA-Seq
stranded
visualization
bedgraph
updated 6.4 years ago by
Rob
7.0k • written 6.4 years ago by
marina.v.yurieva
▴ 580
1
vote
8
replies
3.1k
views
bedGraph compress tools
bedtools
bedGraph
6.5 years ago by
marina.v.yurieva
▴ 580
1
vote
4
replies
1.9k
views
Combining two databases in gtf file, bedtools gives wierd result
bedtools
gtf
noncode
updated 6.5 years ago by
Biostar
20 • written 6.6 years ago by
marina.v.yurieva
▴ 580
2
votes
4
replies
3.7k
views
Counts from cuffdiff VS featurecounts
RNA-Seq
cufflinks
counts
updated 8.3 years ago by
GouthamAtla
12k • written 8.3 years ago by
marina.v.yurieva
▴ 580
3
votes
1
reply
2.4k
views
InterPro Scan error with nucleotide sequences
sequence
domain database
updated 8.4 years ago by
Amitm
★ 2.3k • written 8.4 years ago by
marina.v.yurieva
▴ 580
1
vote
2
replies
1.8k
views
Tophat/Cufflinks for stranded RNA-seq data
RNA-Seq
updated 8.4 years ago by
Devon Ryan
105k • written 8.4 years ago by
marina.v.yurieva
▴ 580
2
votes
3
replies
3.1k
views
Is there an ftp file upload for MG-RAST?
mg-rast
microbiome
metagenomics
updated 2.9 years ago by
Auroshis
• 0 • written 9.9 years ago by
marina.v.yurieva
▴ 580
2
votes
9
replies
4.0k
views
BWA MEM mapping issue
alignment
next-gen
bwa
updated 2.8 years ago by
Ram
44k • written 10.0 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
2.4k
views
False negative SNPs and depth of coverage with sam/bcftools
SNP
bcftools
samtools
updated 2.8 years ago by
Ram
44k • written 10.0 years ago by
marina.v.yurieva
▴ 580
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