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Comment: Comment: Creating custom GTF file for use with Cellranger with barcode sequences
2.2 years ago by stefano.iantorno ▴ 70
4
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3
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1.6k
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Creating custom GTF file for use with Cellranger with barcode sequences
Cellranger
2.2 years ago by stefano.iantorno ▴ 70
17
votes
3
replies
16k
views
Subsetting Granges based on its metadata
genome R
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 70
1
vote
3
replies
6.3k
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PED file format for use with GATK PhaseByTransmission
GATK SNP next-gen-sequencing
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 70
2
votes
5
replies
4.0k
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Running bcftools on vcf files
sequencing SNP
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 70
3
votes
2
replies
5.0k
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using GATK UnifiedGenotyper on a single chromosome
genome java gatk
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 70
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0
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4.0k
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Comment: C: Running bcftools on vcf files
10.7 years ago by stefano.iantorno ▴ 70
0
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1
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4.0k
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Comment: C: Running bcftools on vcf files
10.7 years ago by stefano.iantorno ▴ 70
0
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0
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4.0k
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Comment: Comment: Running bcftools on vcf files
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 70
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0
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2.4k
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Comment: Comment: Variant calling with Freebayes gives M as a reference nucleotide call
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 70
2
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2
replies
2.4k
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Variant calling with Freebayes gives M as a reference nucleotide call
variant snp next-gen-sequencing freebayes
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 70
0
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0
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7.5k
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Comment: C: Phasing variants called from FreeBayes
11.1 years ago by stefano.iantorno ▴ 70
0
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1
reply
7.5k
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Comment: C: Phasing variants called from FreeBayes
11.1 years ago by stefano.iantorno ▴ 70
0
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1
reply
7.5k
views
Comment: C: Phasing variants called from FreeBayes
11.1 years ago by stefano.iantorno ▴ 70
0
votes
5
replies
7.5k
views
Phasing variants called from FreeBayes
SNP genome sequence
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 70
0
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0
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16k
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Comment: C: Subsetting Granges based on its metadata
11.3 years ago by stefano.iantorno ▴ 70
1
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0
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9.0k
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Comment: C: Running GATK DepthOfCoverage on BAM files with multiple RG's
11.3 years ago by stefano.iantorno ▴ 70
0
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0
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9.0k
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Comment: C: Running GATK DepthOfCoverage on BAM files with multiple RG's
11.3 years ago by stefano.iantorno ▴ 70
3
votes
3
replies
9.0k
views
Running GATK DepthOfCoverage on BAM files with multiple RG's
next-gen sequence software error
updated 11.3 years ago by 166k • written 11.3 years ago by ▴ 70
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