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Comment: Comment: Creating custom GTF file for use with Cellranger with barcode sequences
8 months ago by stefano.iantorno ▴ 70
4
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3
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779
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Creating custom GTF file for use with Cellranger with barcode sequences
Cellranger
8 months ago by stefano.iantorno ▴ 70
17
votes
3
replies
14k
views
Subsetting Granges based on its metadata
genome R
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 70
1
vote
3
replies
5.3k
views
PED file format for use with GATK PhaseByTransmission
GATK SNP next-gen-sequencing
updated 23 months ago by 43k • written 9.1 years ago by ▴ 70
2
votes
5
replies
3.4k
views
Running bcftools on vcf files
sequencing SNP
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 70
3
votes
2
replies
4.6k
views
using GATK UnifiedGenotyper on a single chromosome
genome java gatk
updated 2.4 years ago by 43k • written 9.7 years ago by ▴ 70
0
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0
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3.4k
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Comment: C: Running bcftools on vcf files
9.2 years ago by stefano.iantorno ▴ 70
0
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1
reply
3.4k
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Comment: C: Running bcftools on vcf files
9.3 years ago by stefano.iantorno ▴ 70
0
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0
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3.4k
views
Comment: Comment: Running bcftools on vcf files
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 70
0
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0
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2.0k
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Comment: Comment: Variant calling with Freebayes gives M as a reference nucleotide call
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 70
2
votes
2
replies
2.0k
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Variant calling with Freebayes gives M as a reference nucleotide call
variant snp next-gen-sequencing freebayes
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 70
0
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0
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6.5k
views
Comment: C: Phasing variants called from FreeBayes
9.6 years ago by stefano.iantorno ▴ 70
0
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1
reply
6.5k
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Comment: C: Phasing variants called from FreeBayes
9.6 years ago by stefano.iantorno ▴ 70
0
votes
1
reply
6.5k
views
Comment: C: Phasing variants called from FreeBayes
9.6 years ago by stefano.iantorno ▴ 70
0
votes
5
replies
6.5k
views
Phasing variants called from FreeBayes
SNP genome sequence
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 70
0
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0
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14k
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Comment: C: Subsetting Granges based on its metadata
9.8 years ago by stefano.iantorno ▴ 70
1
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0
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8.4k
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Comment: C: Running GATK DepthOfCoverage on BAM files with multiple RG's
9.8 years ago by stefano.iantorno ▴ 70
0
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0
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8.4k
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Comment: C: Running GATK DepthOfCoverage on BAM files with multiple RG's
9.9 years ago by stefano.iantorno ▴ 70
3
votes
3
replies
8.4k
views
Running GATK DepthOfCoverage on BAM files with multiple RG's
next-gen sequence software error
updated 9.9 years ago by 161k • written 9.9 years ago by ▴ 70
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