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News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 2.7 years ago by 45k • written 8.8 years ago by 7.6k
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Answer: A: for go enrichment analysis which tool do you recommend?
5.1 years ago by EagleEye 7.6k
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Answer: A: Is it possible to use DAVID enrichment with single ranked list of genes?
5.3 years ago by EagleEye 7.6k
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Comment: C: Access to Enrichr
5.3 years ago by EagleEye 7.6k
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Comment: C: Access to Enrichr
5.3 years ago by EagleEye 7.6k
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Answer: A: How to do a GO enrichment analysis for large amount of data using R
5.4 years ago by EagleEye 7.6k
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Comment: C: For multiple testing correction in GO analysis, is it ok to remove GO terms with
5.5 years ago by EagleEye 7.6k
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Answer: A: Whats best practice for Gene set enrichment analysis?
5.7 years ago by EagleEye 7.6k
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Comment: C: Tools To Find Gene Ontology Term Enrichment
5.7 years ago by EagleEye 7.6k
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Answer: A: How to find CpG island shore?
updated 5.8 years ago by 45k • written 8.7 years ago by 7.6k
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Answer: A: MiTranscriptome data access
updated 5.8 years ago by 45k • written 9.8 years ago by 7.6k
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Comment: C: extract only geneID and gene symbol from GTF file
updated 5.8 years ago by 45k • written 9.8 years ago by 7.6k
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Answer: A: List of Ensembl Transcript IDs corresponding to protein-coding genes
updated 5.9 years ago by 45k • written 9.8 years ago by 7.6k
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Comment: C: Chromosome wise heat-map using p-values
updated 5.9 years ago by 45k • written 9.8 years ago by 7.6k
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1
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4.2k
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Comment: C: Chromosome wise heat-map using p-values
updated 5.9 years ago by 45k • written 9.8 years ago by 7.6k
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1
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10k
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Answer: A: How to normalise read count per gene
updated 5.9 years ago by 45k • written 9.8 years ago by 7.6k
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Comment: C: How to normalise read count per gene
updated 5.9 years ago by 45k • written 9.8 years ago by 7.6k
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Answer: A: Sra to fastq conversion err
updated 5.9 years ago by 45k • written 9.8 years ago by 7.6k
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1
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2.5k
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Answer: A: NGS pipelines @ free of cost
updated 5.9 years ago by 45k • written 9.8 years ago by 7.6k
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Answer: A: getting the common genes between two lists of genes
updated 5.9 years ago by 45k • written 9.8 years ago by 7.6k
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1
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Answer: A: KEGG pathway overlay of user gene list
updated 5.9 years ago by 45k • written 9.8 years ago by 7.6k
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1
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8.2k
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Answer: A: list of gene or transcript IDs and their length
updated 5.9 years ago by 45k • written 9.8 years ago by 7.6k
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0
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Answer: A: How To Get The Number Of Samples And Sample Tcga Id'S That Are Reported In Tcga
updated 5.9 years ago by 45k • written 9.9 years ago by 7.6k
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2.7k
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Answer: A: KEGG pathway per genes relation
updated 5.9 years ago by 45k • written 9.9 years ago by 7.6k
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1
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5.9k
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Comment: C: featureCounts segmentation fault, Is there any solution yet ?
updated 5.9 years ago by 45k • written 9.9 years ago by 7.6k
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0
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4.1k
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Answer: A: FASTQs to the VCF
updated 5.9 years ago by 45k • written 9.9 years ago by 7.6k
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0
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3.0k
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Answer: A: histone modification and DNA methylation in gene regulation ?
updated 5.9 years ago by 45k • written 9.9 years ago by 7.6k
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1
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8.5k
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Comment: C: IGV not showing the variants detected by GATK and Varscan
updated 5.9 years ago by 45k • written 9.9 years ago by 7.6k
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Answer: A: IGV not showing the variants detected by GATK and Varscan
updated 5.9 years ago by 45k • written 9.9 years ago by 7.6k
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7.1k
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Comment: C: GO terms associated to a list of genes
5.9 years ago by EagleEye 7.6k
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4.8k
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Answer: A: GO enrichmenet analysis of non model organism using bingo
updated 5.9 years ago by 45k • written 9.9 years ago by 7.6k
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0
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9.9k
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Answer: A: Functional Classification of genes
updated 5.9 years ago by 45k • written 10.0 years ago by 7.6k
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1
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4.1k
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Comment: C: BED file with amplicon information
updated 6.0 years ago by 45k • written 10.3 years ago by 7.6k
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3.2k
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Comment: C: RNA seq analysis
updated 6.0 years ago by 45k • written 10.7 years ago by 7.6k
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1
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2.7k
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Comment: C: Analyzing LogRPKM Counts Data for finding DEGs(Differential Expressed Genes)
6.0 years ago by EagleEye 7.6k
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1.4k
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Comment: C: i need to find a database
6.0 years ago by EagleEye 7.6k
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6.8k
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Answer: A: Something better than GSEA?
6.0 years ago by EagleEye 7.6k
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5.7k
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Comment: C: ComplexHeatmap break values appear different in the plots
6.1 years ago by EagleEye 7.6k
2
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6
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5.7k
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ComplexHeatmap break values appear different in the plots
ComplexHeatmap
updated 6.1 years ago by 89k • written 6.1 years ago by 7.6k
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Comment: C: ComplexHeatmap break values appear different in the plots
6.1 years ago by EagleEye 7.6k
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1
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5.7k
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Comment: C: ComplexHeatmap break values appear different in the plots
6.1 years ago by EagleEye 7.6k
0
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1
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5.9k
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Comment: C: featureCounts segmentation fault, Is there any solution yet ?
updated 6.1 years ago by 45k • written 9.9 years ago by 7.6k
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1
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1.7k
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Comment: C: Duplicated genes symbol from supplementary information paper
6.2 years ago by EagleEye 7.6k
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6.6k
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Answer: A: Help! Gene Ontology Enrichment Analysis
6.2 years ago by EagleEye 7.6k
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0
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1.2k
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Answer: A: Sample Mouse RNA-Seq Dataset
6.3 years ago by EagleEye 7.6k
2
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1
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7.0k
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Answer: A: Analyzing ChIP-seq without input
6.3 years ago by EagleEye 7.6k
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0
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1.2k
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Answer: A: Pathways Enrichment analysis
6.3 years ago by EagleEye 7.6k
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4.6k
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Comment: C: Where can I download GO terms and their associated E. coli genes?
6.4 years ago by EagleEye 7.6k
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1
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4.6k
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Comment: C: Where can I download GO terms and their associated E. coli genes?
6.4 years ago by EagleEye 7.6k
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1
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4.6k
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Comment: C: Where can I download GO terms and their associated E. coli genes?
6.4 years ago by EagleEye 7.6k
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