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2
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809
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Answer: Answer: merging tetraploid vcf files through bcftools
9 months ago by Axzd ▴ 80
0
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1
reply
377
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Pileup of mapped diploid
diploid Pileup
10 months ago by Axzd ▴ 80
0
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0
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377
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Answer: Answer: Pileup of mapped diploid
10 months ago by Axzd ▴ 80
0
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1
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1.0k
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Comment: Comment: Calling variants from a diploid assembly mapped on a haploid reference, tool sug
13 months ago by Axzd ▴ 80
0
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0
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1.0k
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Comment: Comment: Calling variants from a diploid assembly mapped on a haploid reference, tool sug
13 months ago by Axzd ▴ 80
2
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5
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1.0k
views
Calling variants from a diploid assembly mapped on a haploid reference, tool suggestion?
SNP phased diploid
updated 13 months ago by 148k • written 13 months ago by ▴ 80
4
votes
2
replies
938
views
BBtools bug in reporting the number of substitutions in the console output, it seems to report insanely high rates of heterozygosity
SNP bbtools
updated 14 months ago by ★ 5.0k • written 14 months ago by ▴ 80
0
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0
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2.7k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
14 months ago by Axzd ▴ 80
0
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1
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2.7k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
14 months ago by Axzd ▴ 80
0
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1
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2.7k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
14 months ago by Axzd ▴ 80
0
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1
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2.7k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
14 months ago by Axzd ▴ 80
0
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1
reply
2.7k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
14 months ago by Axzd ▴ 80
0
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1
reply
2.7k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
14 months ago by Axzd ▴ 80
0
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0
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2.7k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
14 months ago by Axzd ▴ 80
0
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1
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2.7k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
14 months ago by Axzd ▴ 80
15
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20
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2.7k
views
Bbtools callvariant multisample mode, + base recalibration
Bbtools
14 months ago by Axzd ▴ 80
0
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1
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1.2k
views
Comment: Comment: BBtools callvariants.sh
15 months ago by Axzd ▴ 80
0
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0
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1.2k
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Comment: Comment: BBtools callvariants.sh
15 months ago by Axzd ▴ 80
2
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4
replies
1.2k
views
BBtools callvariants.sh
SNP bbtools alignment
updated 15 months ago by 20k • written 19 months ago by ▴ 80
0
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0
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1.3k
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Comment: Comment: How to annotate function of genes from non-model organism
15 months ago by Axzd ▴ 80
0
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0
replies
904
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Comment: Comment: Help me understand "for stripped" in bcftools isec output
15 months ago by Axzd ▴ 80
1
vote
0
replies
885
views
Answer: Answer: GWAS in python?
15 months ago by Axzd ▴ 80
1
vote
2
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904
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Help me understand "for stripped" in bcftools isec output
bcftools SNP
updated 15 months ago by 148k • written 15 months ago by ▴ 80
0
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1
reply
1.3k
views
Answer: Answer: How to annotate function of genes from non-model organism
15 months ago by Axzd ▴ 80
0
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0
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972
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Comment: Comment: Most sensible way to find private SNPs from a multisamples vcf with bcftools
15 months ago by Axzd ▴ 80
0
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0
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3.6k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
15 months ago by Axzd ▴ 80
1
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3
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972
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Most sensible way to find private SNPs from a multisamples vcf with bcftools
bcftools SNP vcf
15 months ago by Axzd ▴ 80
0
votes
1
reply
972
views
Answer: Answer: Most sensible way to find private SNPs from a multisamples vcf with bcftools
15 months ago by Axzd ▴ 80
20
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29
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3.6k
views
6 follow
Using bcftools to find unique alt homozygous sites
bcftools
updated 15 months ago by 165k • written 15 months ago by ▴ 80
0
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0
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43k
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Comment: Comment: Converting a VCF with SNPs and indels to BED format
15 months ago by Axzd ▴ 80
0
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0
replies
1.2k
views
Comment: Comment: Find groups of SNP in a multi sample VCF with bcftools
15 months ago by Axzd ▴ 80
0
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0
replies
3.6k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
15 months ago by Axzd ▴ 80
0
votes
1
reply
43k
views
Comment: Comment: Converting a VCF with SNPs and indels to BED format
15 months ago by Axzd ▴ 80
0
votes
0
replies
3.6k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
15 months ago by Axzd ▴ 80
0
votes
1
reply
3.6k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
15 months ago by Axzd ▴ 80
0
votes
1
reply
3.6k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
15 months ago by Axzd ▴ 80
0
votes
0
replies
3.6k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
15 months ago by Axzd ▴ 80
0
votes
1
reply
3.6k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
15 months ago by Axzd ▴ 80
0
votes
0
replies
3.6k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
15 months ago by Axzd ▴ 80
0
votes
0
replies
721
views
Answer: Answer: Filter vcf SNPs by sample GT value
15 months ago by Axzd ▴ 80
1
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1
reply
1.3k
views
Answer: Answer: Adapters finder
15 months ago by Axzd ▴ 80
0
votes
1
reply
870
views
Comment: Comment: Missing BUSCOs are actually present in the transcriptome based on BLASTx?
15 months ago by Axzd ▴ 80
0
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0
replies
812
views
Comment: Comment: HiFi read alignment with vg giraffe
15 months ago by Axzd ▴ 80
0
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0
replies
730
views
Comment: Comment: How would you define homologous windows between 2 genomes?
15 months ago by Axzd ▴ 80
2
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3
replies
730
views
How would you define homologous windows between 2 genomes?
genomics comparison mapping
15 months ago by Axzd ▴ 80
2
votes
1
reply
653
views
Reducing BWA mem seed length when a genome is highly heterozygous?
alignment bwa
updated 15 months ago by 20k • written 16 months ago by ▴ 80
0
votes
0
replies
393
views
Fastest way to find private SNPs for each sample
SNP
16 months ago by Axzd ▴ 80
0
votes
1
reply
521
views
Expanding gVCF box from GATK
GATK VCF gVCF
updated 18 months ago by 23k • written 18 months ago by ▴ 80
0
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1
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1.0k
views
Comment: Comment: Is there a more elegant way to print the list of all regions from a bed file?
18 months ago by Axzd ▴ 80
0
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0
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1.0k
views
Comment: Comment: Is there a more elegant way to print the list of all regions from a bed file?
18 months ago by Axzd ▴ 80
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