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2
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1.4k
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Answer: Answer: merging tetraploid vcf files through bcftools
19 months ago by Axzd ▴ 80
0
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1
reply
598
views
Pileup of mapped diploid
diploid Pileup
20 months ago by Axzd ▴ 80
0
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0
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598
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Answer: Answer: Pileup of mapped diploid
20 months ago by Axzd ▴ 80
0
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1
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1.6k
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Comment: Comment: Calling variants from a diploid assembly mapped on a haploid reference, tool sug
22 months ago by Axzd ▴ 80
0
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0
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1.6k
views
Comment: Comment: Calling variants from a diploid assembly mapped on a haploid reference, tool sug
22 months ago by Axzd ▴ 80
2
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5
replies
1.6k
views
Calling variants from a diploid assembly mapped on a haploid reference, tool suggestion?
SNP phased diploid
updated 22 months ago by 154k • written 22 months ago by ▴ 80
4
votes
2
replies
1.3k
views
BBtools bug in reporting the number of substitutions in the console output, it seems to report insanely high rates of heterozygosity
SNP bbtools
updated 23 months ago by ★ 5.0k • written 23 months ago by ▴ 80
0
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0
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4.6k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
23 months ago by Axzd ▴ 80
0
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1
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4.6k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
23 months ago by Axzd ▴ 80
0
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1
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4.6k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
23 months ago by Axzd ▴ 80
0
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1
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4.6k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
23 months ago by Axzd ▴ 80
0
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1
reply
4.6k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
23 months ago by Axzd ▴ 80
0
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1
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4.6k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
23 months ago by Axzd ▴ 80
0
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0
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4.6k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
23 months ago by Axzd ▴ 80
0
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1
reply
4.6k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
23 months ago by Axzd ▴ 80
15
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20
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4.6k
views
Bbtools callvariant multisample mode, + base recalibration
Bbtools
23 months ago by Axzd ▴ 80
0
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1
reply
1.7k
views
Comment: Comment: BBtools callvariants.sh
2.0 years ago by Axzd ▴ 80
0
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0
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1.7k
views
Comment: Comment: BBtools callvariants.sh
2.0 years ago by Axzd ▴ 80
2
votes
4
replies
1.7k
views
BBtools callvariants.sh
SNP bbtools alignment
updated 2.0 years ago by 20k • written 2.4 years ago by ▴ 80
0
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0
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2.1k
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Comment: Comment: How to annotate function of genes from non-model organism
2.0 years ago by Axzd ▴ 80
0
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0
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1.4k
views
Comment: Comment: Help me understand "for stripped" in bcftools isec output
2.0 years ago by Axzd ▴ 80
1
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0
replies
1.2k
views
Answer: Answer: GWAS in python?
2.0 years ago by Axzd ▴ 80
1
vote
2
replies
1.4k
views
Help me understand "for stripped" in bcftools isec output
bcftools SNP
updated 2.0 years ago by 154k • written 2.0 years ago by ▴ 80
0
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1
reply
2.1k
views
Answer: Answer: How to annotate function of genes from non-model organism
2.0 years ago by Axzd ▴ 80
0
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0
replies
1.4k
views
Comment: Comment: Most sensible way to find private SNPs from a multisamples vcf with bcftools
2.0 years ago by Axzd ▴ 80
0
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0
replies
6.2k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
2.0 years ago by Axzd ▴ 80
1
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3
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1.4k
views
Most sensible way to find private SNPs from a multisamples vcf with bcftools
bcftools SNP vcf
2.0 years ago by Axzd ▴ 80
0
votes
1
reply
1.4k
views
Answer: Answer: Most sensible way to find private SNPs from a multisamples vcf with bcftools
2.0 years ago by Axzd ▴ 80
20
votes
29
replies
6.2k
views
6 follow
Using bcftools to find unique alt homozygous sites
bcftools
updated 2.0 years ago by 166k • written 2.0 years ago by ▴ 80
0
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0
replies
47k
views
Comment: Comment: Converting a VCF with SNPs and indels to BED format
2.0 years ago by Axzd ▴ 80
0
votes
0
replies
1.8k
views
Comment: Comment: Find groups of SNP in a multi sample VCF with bcftools
2.0 years ago by Axzd ▴ 80
0
votes
0
replies
6.2k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
2.0 years ago by Axzd ▴ 80
0
votes
1
reply
47k
views
Comment: Comment: Converting a VCF with SNPs and indels to BED format
2.0 years ago by Axzd ▴ 80
0
votes
0
replies
6.2k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
2.0 years ago by Axzd ▴ 80
0
votes
1
reply
6.2k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
2.0 years ago by Axzd ▴ 80
0
votes
1
reply
6.2k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
2.0 years ago by Axzd ▴ 80
0
votes
0
replies
6.2k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
2.0 years ago by Axzd ▴ 80
0
votes
1
reply
6.2k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
2.0 years ago by Axzd ▴ 80
0
votes
0
replies
6.2k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
2.0 years ago by Axzd ▴ 80
0
votes
0
replies
1.0k
views
Answer: Answer: Filter vcf SNPs by sample GT value
2.0 years ago by Axzd ▴ 80
1
vote
1
reply
2.1k
views
Answer: Answer: Adapters finder
2.0 years ago by Axzd ▴ 80
0
votes
1
reply
1.3k
views
Comment: Comment: Missing BUSCOs are actually present in the transcriptome based on BLASTx?
2.0 years ago by Axzd ▴ 80
0
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0
replies
1.2k
views
Comment: Comment: HiFi read alignment with vg giraffe
2.0 years ago by Axzd ▴ 80
0
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0
replies
1.1k
views
Comment: Comment: How would you define homologous windows between 2 genomes?
2.0 years ago by Axzd ▴ 80
2
votes
3
replies
1.1k
views
How would you define homologous windows between 2 genomes?
genomics comparison mapping
2.0 years ago by Axzd ▴ 80
2
votes
1
reply
949
views
Reducing BWA mem seed length when a genome is highly heterozygous?
alignment bwa
updated 2.0 years ago by 20k • written 2.1 years ago by ▴ 80
0
votes
0
replies
515
views
Fastest way to find private SNPs for each sample
SNP
2.1 years ago by Axzd ▴ 80
0
votes
1
reply
732
views
Expanding gVCF box from GATK
GATK VCF gVCF
updated 2.2 years ago by 23k • written 2.2 years ago by ▴ 80
0
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1
reply
1.6k
views
Comment: Comment: Is there a more elegant way to print the list of all regions from a bed file?
2.2 years ago by Axzd ▴ 80
0
votes
0
replies
1.6k
views
Comment: Comment: Is there a more elegant way to print the list of all regions from a bed file?
2.2 years ago by Axzd ▴ 80
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