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2
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1
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1.3k
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Answer: A: FastQ rather than fasta RNA-Seq read simulation
5.7 years ago by Gordon Smyth ★ 8.3k
4
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0
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5.4k
views
Answer: A: How can I make boxplot for a single gene from one of the contrasts generated by
5.8 years ago by Gordon Smyth ★ 8.3k
3
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0
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7.5k
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Answer: Answer: limma: logFC column in topTable
4.1 years ago by Gordon Smyth ★ 8.3k
2
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1
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3.2k
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Answer: A: Should normalization of expression data be performed over the entire dataset or
5.8 years ago by Gordon Smyth ★ 8.3k
2
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2
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3.4k
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Answer: A: EdgeR analysis for DE genes with different time courses
5.8 years ago by Gordon Smyth ★ 8.3k
1
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2
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3.4k
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Comment: C: EdgeR analysis for DE genes with different time courses
5.8 years ago by Gordon Smyth ★ 8.3k
2
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0
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3.4k
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Comment: C: EdgeR analysis for DE genes with different time courses
5.8 years ago by Gordon Smyth ★ 8.3k
1
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0
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2.6k
views
Comment: C: Calculating z-scores using edgeR's fitted values (output of glmQLFit)
5.8 years ago by Gordon Smyth ★ 8.3k
5
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1
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2.6k
views
Answer: A: Calculating z-scores using edgeR's fitted values (output of glmQLFit)
5.8 years ago by Gordon Smyth ★ 8.3k
0
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1
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3.4k
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Answer: A: Agilent Data Normalization Result
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 8.3k
1
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1
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1.5k
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Answer: A: Trainning on NGS
5.9 years ago by Gordon Smyth ★ 8.3k
2
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0
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1.3k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
proteomics
updated 2.3 years ago by 45k • written 5.9 years ago by ★ 8.3k
2
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0
replies
3.1k
views
Job: Postdoctoral position, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Australia
Australia Hi-C
updated 2.4 years ago by 45k • written 9.3 years ago by ★ 8.3k
3
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1
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1.4k
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Answer: A: Voom with QuSAGE
5.9 years ago by Gordon Smyth ★ 8.3k
1
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0
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1.8k
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Answer: A: Analyzing normalized microarray data
5.9 years ago by Gordon Smyth ★ 8.3k
1
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1
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1.6k
views
Answer: A: Remove glmLRT rows under a certain pValue
6.0 years ago by Gordon Smyth ★ 8.3k
4
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2
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8.5k
views
Answer: A: deseq2 or edgeR
6.0 years ago by Gordon Smyth ★ 8.3k
1
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1
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3.9k
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Comment: C: Would this laptop be futureproof for bioinformatics work
6.0 years ago by Gordon Smyth ★ 8.3k
0
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0
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15k
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Comment: C: How to normalized TPM with TMM method?
6.1 years ago by Gordon Smyth ★ 8.3k
2
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0
replies
3.9k
views
Answer: A: how to caculate effective length for RNA sequencing?
6.1 years ago by Gordon Smyth ★ 8.3k
1
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1
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15k
views
Comment: C: How to normalized TPM with TMM method?
6.1 years ago by Gordon Smyth ★ 8.3k
16
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2
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15k
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Answer: A: How to normalized TPM with TMM method?
6.1 years ago by Gordon Smyth ★ 8.3k
2
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2
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2.1k
views
Answer: A: illumina ht 12 v4 data analysis
6.1 years ago by Gordon Smyth ★ 8.3k
1
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0
replies
4.2k
views
Answer: A: Assistance with coxph and standard errors
6.1 years ago by Gordon Smyth ★ 8.3k
3
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0
replies
6.4k
views
Answer: A: Why limma output has logFC when I fit the model to a continuous variable?
6.1 years ago by Gordon Smyth ★ 8.3k
2
votes
1
reply
8.0k
views
Answer: A: edgeR DGElist Error: Negative counts not allowed.
6.1 years ago by Gordon Smyth ★ 8.3k
2
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0
replies
5.0k
views
Answer: A: limma voom - mean variance trend
6.2 years ago by Gordon Smyth ★ 8.3k
2
votes
0
replies
3.6k
views
Answer: A: diffSplice: Error in exon.genes[o, , drop = FALSE] : incorrect number of dimensi
6.2 years ago by Gordon Smyth ★ 8.3k
1
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1
reply
2.7k
views
Answer: A: edgeR : How to test differential exon usage on case/control study across all tim
6.2 years ago by Gordon Smyth ★ 8.3k
1
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0
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3.7k
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Comment: C: How to correctly filer out gene expression matrix by measuring Pearson correlati
6.2 years ago by Gordon Smyth ★ 8.3k
0
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1
reply
3.7k
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Comment: C: How to correctly filer out gene expression matrix by measuring Pearson correlati
6.2 years ago by Gordon Smyth ★ 8.3k
0
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1
reply
4.3k
views
Comment: C: How to filter out probsets and genes from Affymetrix microarray expression data
6.2 years ago by Gordon Smyth ★ 8.3k
2
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1
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4.3k
views
Comment: C: How to filter out probsets and genes from Affymetrix microarray expression data
6.2 years ago by Gordon Smyth ★ 8.3k
2
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1
reply
1.7k
views
Answer: A: Could not reproduce the results (MA-plot) in the paper when analyzing two-color
6.4 years ago by Gordon Smyth ★ 8.3k
1
vote
0
replies
3.2k
views
Comment: C: EdgeR: Filtering Counts Relationship to Sigficance.
6.4 years ago by Gordon Smyth ★ 8.3k
0
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0
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3.2k
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Answer: A: EdgeR: Filtering Counts Relationship to Sigficance.
6.4 years ago by Gordon Smyth ★ 8.3k
0
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0
replies
3.9k
views
Answer: A: Building a biologically meaningful design matrix for limma/voom in a large RNASe
updated 6.4 years ago by 89k • written 6.4 years ago by ★ 8.3k
0
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0
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3.0k
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Answer: A: Rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
6.5 years ago by Gordon Smyth ★ 8.3k
1
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0
replies
1.4k
views
Answer: A: Access edgeR test statistic
6.5 years ago by Gordon Smyth ★ 8.3k
0
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0
replies
3.0k
views
Answer: A: Error while using EdgeR
6.5 years ago by Gordon Smyth ★ 8.3k
2
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0
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5.9k
views
Answer: A: Error when running edgeR
6.5 years ago by Gordon Smyth ★ 8.3k
2
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1
reply
17k
views
Answer: A: error while making a DegList object on R using edgeR package (Error in colSums(c
6.5 years ago by Gordon Smyth ★ 8.3k
1
vote
1
reply
13k
views
Answer: A: Edger Logcpm Calculation
6.5 years ago by Gordon Smyth ★ 8.3k
3
votes
1
reply
2.2k
views
Answer: A: how do I properly use edgeR::scaleOffset to combine two targeted RNA-seq panels?
6.5 years ago by Gordon Smyth ★ 8.3k
2
votes
1
reply
1.6k
views
Answer: A: differential gene set testing combining genes from multiple panels
6.5 years ago by Gordon Smyth ★ 8.3k
8
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0
replies
3.3k
views
Answer: A: edgeR - DE with one disease sample vs. multiple control samples?
6.5 years ago by Gordon Smyth ★ 8.3k
3
votes
0
replies
12k
views
Answer: A: (edgeR-related) DGElist error message 'Negative counts not allowed'.
6.5 years ago by Gordon Smyth ★ 8.3k
0
votes
0
replies
2.1k
views
Answer: A: Query about gene ontology analysis in edgeR vs GSEA
6.5 years ago by Gordon Smyth ★ 8.3k
2
votes
1
reply
1.9k
views
Answer: A: error in read.maimages {limma}
6.6 years ago by Gordon Smyth ★ 8.3k
3
votes
1
reply
20k
views
Answer: A: Best RNA-Seq aligner: A comparison of mapping tools
6.6 years ago by Gordon Smyth ★ 8.3k
577 results • Page 11 of 12
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