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Comment: C: Can't convert paired end BAM to bed using bedtools
10.1 years ago by James Ashmore ★ 3.5k
1
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0
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27k
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Comment: C: Run multiple fastq.gz files with FastQC and yield single report?
10.1 years ago by James Ashmore ★ 3.5k
0
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0
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1.9k
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Comment: C: discordant results between bedTools and awk
10.1 years ago by James Ashmore ★ 3.5k
6
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1
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12k
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Answer: A: Binning Over Genes And Calculating The Coverage [Bedops/Bedmap]
10.1 years ago by James Ashmore ★ 3.5k
4
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1
reply
7.6k
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Answer: Answer: Making TSS plots for some genes for a particular histone mark
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 3.5k
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1
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8.1k
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Comment: C: Annotating/Finding "NNNNNN" scaffold gaps in genome assembly
10.1 years ago by James Ashmore ★ 3.5k
10
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1
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8.1k
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Answer: Answer: Annotating/Finding "NNNNNN" scaffold gaps in genome assembly
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 3.5k
0
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1
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4.9k
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Comment: C: Normalization of DNase-seq samples with globally different chromatin structures
10.2 years ago by James Ashmore ★ 3.5k
3
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5
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4.9k
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Normalization of DNase-seq samples with globally different chromatin structures
normalization DNase-seq
updated 2.9 years ago by 45k • written 10.2 years ago by ★ 3.5k
0
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0
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4.9k
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Comment: C: Normalization of DNase-seq samples with globally different chromatin structures
10.2 years ago by James Ashmore ★ 3.5k
0
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1
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9.0k
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Comment: C: Bedtools bamtofastq error
10.2 years ago by James Ashmore ★ 3.5k
0
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0
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6.8k
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Comment: C: Problem viewing BAM files in IGV - samtools sort error?
10.2 years ago by James Ashmore ★ 3.5k
0
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0
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6.8k
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Answer: A: Problem viewing BAM files in IGV - samtools sort error?
10.2 years ago by James Ashmore ★ 3.5k
1
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0
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17k
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Comment: Comment: Can't convert paired end BAM to bed using bedtools
updated 2.8 years ago by 45k • written 10.2 years ago by ★ 3.5k
0
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1
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17k
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Comment: C: Can't convert paired end BAM to bed using bedtools
10.2 years ago by James Ashmore ★ 3.5k
4
votes
1
reply
17k
views
Answer: Answer: Can't convert paired end BAM to bed using bedtools
updated 2.8 years ago by 45k • written 10.2 years ago by ★ 3.5k
0
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0
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7.8k
views
Comment: C: Sublime Text 2: Output Error After I Installed Anaconda
10.2 years ago by James Ashmore ★ 3.5k
1
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0
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3.1k
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Answer: Answer: Software for drawing peak shapes
updated 2.8 years ago by 45k • written 10.2 years ago by ★ 3.5k
0
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0
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2.3k
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Comment: C: fasta generation for functional elements
10.2 years ago by James Ashmore ★ 3.5k
1
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1
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2.8k
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Comment: Comment: Tool to retrieve regions with reads?
updated 2.7 years ago by 45k • written 10.2 years ago by ★ 3.5k
0
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0
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2.8k
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Comment: Comment: Tool to retrieve regions with reads?
updated 2.7 years ago by 45k • written 10.2 years ago by ★ 3.5k
0
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0
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2.3k
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Answer: A: fasta generation for functional elements
10.2 years ago by James Ashmore ★ 3.5k
2
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2
replies
2.8k
views
Answer: Answer: Tool to retrieve regions with reads?
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 3.5k
0
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1
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4.2k
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Comment: C: Is there a correct order in which to filter BAM files?
10.4 years ago by James Ashmore ★ 3.5k
2
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7
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4.2k
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Is there a correct order in which to filter BAM files?
BAM Filtering
updated 2.6 years ago by 45k • written 10.4 years ago by ★ 3.5k
0
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0
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4.2k
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Comment: C: Filtering paired and single end reads from a BAM file
10.4 years ago by James Ashmore ★ 3.5k
3
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2
replies
4.2k
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Filtering paired and single end reads from a BAM file
bedtools samtools
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 3.5k
0
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1
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12k
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Comment: Comment: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 3.5k
0
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1
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12k
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Comment: Comment: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 3.5k
0
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1
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12k
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Comment: C: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
10.6 years ago by James Ashmore ★ 3.5k
0
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0
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3.7k
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Answer: A: Find all occurrences of a fixed sequence in a large genome
10.6 years ago by James Ashmore ★ 3.5k
0
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0
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11k
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Comment: C: How do I view the height / distribution of ChIP-seq peaks?
10.6 years ago by James Ashmore ★ 3.5k
10
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5
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11k
views
How do I view the height / distribution of ChIP-seq peaks?
visualisation ChIP-Seq peaks
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 3.5k
0
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0
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4.7k
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Comment: C: Illumina Chip-seq run failing Kmer content module in FastQC
10.9 years ago by James Ashmore ★ 3.5k
0
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1
reply
4.7k
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Comment: C: Illumina Chip-seq run failing Kmer content module in FastQC
10.9 years ago by James Ashmore ★ 3.5k
4
votes
7
replies
4.7k
views
Illumina Chip-seq run failing Kmer content module in FastQC
ChIP-Seq FastQC
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 3.5k
0
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0
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4.7k
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Comment: C: Illumina Chip-seq run failing Kmer content module in FastQC
10.9 years ago by James Ashmore ★ 3.5k
0
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1
reply
3.2k
views
Comment: Comment: Analysing SOLiD colorspace reads for enriched peaks
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 3.5k
2
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4
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3.2k
views
Analysing SOLiD colorspace reads for enriched peaks
SOLiD
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 3.5k
10
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4
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6.4k
views
How can I programmatically download the GEO DataSets of a given accession?
SRA Entrez DamID-seq GEO
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 3.5k
290 results • Page 6 of 6
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