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Comment: C: Getting allele frequency and zygosity information from several vcf file
7.1 years ago by seta ★ 1.9k
0
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1
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6.1k
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Comment: C: Getting allele frequency and zygosity information from several vcf file
7.1 years ago by seta ★ 1.9k
0
votes
1
reply
6.1k
views
Comment: C: Getting allele frequency and zygosity information from several vcf file
7.1 years ago by seta ★ 1.9k
6
votes
19
replies
6.1k
views
Getting allele frequency and zygosity information from several vcf file
vcf allele frequency zygocity
updated 7.2 years ago by 89k • written 7.2 years ago by ★ 1.9k
0
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0
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2.9k
views
Comment: C: The best way to get the biologically meaningful interpretation from differential
updated 7.2 years ago by 45k • written 9.7 years ago by ★ 1.9k
0
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1
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3.7k
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Comment: C: A strange problem with annotation of vcf file
7.2 years ago by seta ★ 1.9k
0
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1
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3.7k
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Comment: C: A strange problem with annotation of vcf file
7.2 years ago by seta ★ 1.9k
0
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0
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5.6k
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Comment: C: Hard filtering results of vcf file for multiple samps
7.2 years ago by seta ★ 1.9k
0
votes
1
reply
5.6k
views
Comment: C: Hard filtering results of vcf file for multiple samps
7.2 years ago by seta ★ 1.9k
0
votes
1
reply
5.6k
views
Comment: C: Hard filtering results of vcf file for multiple samps
7.2 years ago by seta ★ 1.9k
4
votes
9
replies
5.6k
views
Hard filtering results of vcf file for multiple samps
variant calling GATK hard filtering
updated 7.2 years ago by 16k • written 7.3 years ago by ★ 1.9k
0
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0
replies
1.9k
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Comment: C: GO annotations with or without gene isoforms
7.2 years ago by seta ★ 1.9k
0
votes
1
reply
5.6k
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Comment: C: Hard filtering results on vcf file for multiple samples
7.2 years ago by seta ★ 1.9k
0
votes
0
replies
2.9k
views
Comment: C: Applying BQSR before running GATK's HaplotypeCaller on whole-genome sequencing d
7.3 years ago by seta ★ 1.9k
1
vote
2
replies
2.9k
views
Applying BQSR before running GATK's HaplotypeCaller on whole-genome sequencing data
variant calling HaplotypeCaller
updated 7.3 years ago by 16k • written 7.3 years ago by ★ 1.9k
0
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0
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3.7k
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Comment: C: Why there are some discrepancies between VEP output and "variation" section of E
7.3 years ago by seta ★ 1.9k
0
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0
replies
1.4k
views
Comment: C: hormone information and secondary metabolite biosynthesis pathway information fo
7.3 years ago by seta ★ 1.9k
0
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1
reply
3.7k
views
Comment: C: Why there are some discrepancies between VEP output and "variation" section of E
7.3 years ago by seta ★ 1.9k
0
votes
1
reply
1.4k
views
Answer: A: hormone information and secondary metabolite biosynthesis pathway information fo
7.3 years ago by seta ★ 1.9k
13
votes
9
replies
19k
views
how to extract best hits of blast in terms of e-value, identity,...?
blast RNA-Seq alignment
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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1
reply
4.4k
views
Comment: C: Microbial diversity analysis using whole-genome metagenomic data
7.4 years ago by seta ★ 1.9k
0
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1
reply
4.3k
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Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
7.4 years ago by seta ★ 1.9k
14
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20
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4.3k
views
Please suggest an appropriate genome-guided transcriptome assembler
RNA-Seq genome alignment marker
updated 7.4 years ago by 89k • written 7.4 years ago by ★ 1.9k
0
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0
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4.3k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
7.4 years ago by seta ★ 1.9k
0
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0
replies
1.5k
views
Comment: C: Please provide me your comments on the variant calling in this case
7.4 years ago by seta ★ 1.9k
0
votes
1
reply
2.5k
views
Error with alignReads.pl in Trinity?
Assembly RNA-Seq next-gen-sequencing
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.9k
0
votes
1
reply
1.5k
views
Comment: C: Please provide me your comments on the variant calling in this case
7.5 years ago by seta ★ 1.9k
0
votes
4
replies
1.5k
views
Please provide me your comments on the variant calling in this case
variant calling genome sequencing
7.5 years ago by seta ★ 1.9k
0
votes
0
replies
3.8k
views
Comment: C: Poly A trimming from RNA-seq data by bbduk (bbmap package)
7.5 years ago by seta ★ 1.9k
0
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2
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3.8k
views
Comment: C: Poly A trimming from RNA-seq data by bbduk (bbmap package)
7.5 years ago by seta ★ 1.9k
0
votes
4
replies
3.8k
views
Poly A trimming from RNA-seq data by bbduk (bbmap package)
polyA trimming RNA-seq bbduk bbmap
updated 7.5 years ago by 48k • written 7.5 years ago by ★ 1.9k
0
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0
replies
2.1k
views
Comment: C: Is haplotype phasing essential after variant calling?
7.5 years ago by seta ★ 1.9k
3
votes
2
replies
2.1k
views
Is haplotype phasing essential after variant calling?
haplotype phasing genome sequencing
updated 7.5 years ago by 48k • written 7.5 years ago by ★ 1.9k
0
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0
replies
1.9k
views
Comment: C: Aligning short reads to a human specific gene instead of reference genome
7.5 years ago by seta ★ 1.9k
0
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0
replies
1.9k
views
Comment: C: Aligning short reads to a human specific gene instead of reference genome
7.5 years ago by seta ★ 1.9k
3
votes
4
replies
1.9k
views
Aligning short reads to a human specific gene instead of reference genome
alignment human reference genome
7.5 years ago by seta ★ 1.9k
0
votes
0
replies
1.7k
views
Comment: C: Please suggest your idea for variant calling analysis of many BAM files from who
7.5 years ago by seta ★ 1.9k
0
votes
0
replies
1.7k
views
Comment: C: Please suggest your idea for variant calling analysis of many BAM files from who
7.5 years ago by seta ★ 1.9k
2
votes
4
replies
1.7k
views
Please suggest your idea for variant calling analysis of many BAM files from whole genome sequencing
variant calling alingnment whole genome sequencing
updated 7.5 years ago by 16k • written 7.5 years ago by ★ 1.9k
0
votes
1
reply
3.1k
views
Comment: C: VCF file manipulation for extracting the required information
7.5 years ago by seta ★ 1.9k
2
votes
2
replies
3.9k
views
k-mer optimization in Trinity
RNA-Seq Assembly next-gen
updated 7.6 years ago by • 0 • written 10.9 years ago by ★ 1.9k
1
vote
10
replies
9.3k
views
How to change fastq reads header for running Trinity on them?
trinity RNA-Seq ngs Assembly
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
2
votes
7
replies
5.9k
views
Please adivse me on differential expression analysis on the STAR/Stringtie output
differential expression STAR stringtie count edgeR
updated 7.7 years ago by 20 • written 8.7 years ago by ★ 1.9k
0
votes
0
replies
4.1k
views
Answer: A: Negative and positive linkage disequilibrium
7.8 years ago by seta ★ 1.9k
0
votes
5
replies
4.9k
views
threshold of bonferroni-corrected p-value
RNA-Seq R
updated 3.7 years ago by 45k • written 10.9 years ago by ★ 1.9k
0
votes
0
replies
2.6k
views
Cuffcompare on the merged GTF file produced by Stringtie
Cufflinks Stringtie splicing cuffdiff
updated 7.8 years ago by 20 • written 8.6 years ago by ★ 1.9k
4
votes
5
replies
4.2k
views
Please clarify me about countOverlaps()?
RNA-Seq countOverlaps R
updated 18 months ago by 45k • written 7.8 years ago by ★ 1.9k
0
votes
1
reply
4.2k
views
Comment: C: Please clarify me about countOverlaps()?
7.8 years ago by seta ★ 1.9k
1
vote
0
replies
1.3k
views
Comment: C: Please help to understand the concept of the sentence about cufflinks
7.9 years ago by seta ★ 1.9k
2
votes
2
replies
1.3k
views
Please help to understand the concept of the sentence about cufflinks
cufflinks likelihood function RNA-Seq
updated 7.9 years ago by 89k • written 7.9 years ago by ★ 1.9k
868 results • Page 8 of 18
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