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0
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179
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Problem with GATK FilterMutectCalls : using contamination table doesn' t change anything
vcf
contaminationtable
gatk
filtermutectcalls
genomics
4 weeks ago by
Samuel
▴ 20
0
votes
0
replies
385
views
Comment:
Comment: I can't add VAF from population for all of my variants from VCF file
5 weeks ago by
Samuel
▴ 20
0
votes
0
replies
183
views
Issues while trying to create my own PON (Panel Of Normals) with GATK
vcf
gatk
somatic
genomics
variants
5 weeks ago by
Samuel
▴ 20
0
votes
2
replies
385
views
I can't add VAF from population for all of my variants from VCF file
vaf
vcf
genomics
gnomad
allelicfrequency
5 weeks ago by
Samuel
▴ 20
0
votes
1
reply
380
views
Comment:
Comment: Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
7 weeks ago by
Samuel
▴ 20
1
vote
3
replies
380
views
Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
mutations
vcf
somatic
varscan2
samtools
updated 7 weeks ago by
Pierre Lindenbaum
161k • written 7 weeks ago by
Samuel
▴ 20
0
votes
0
replies
731
views
Comment:
Comment: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
8 weeks ago by
Samuel
▴ 20
0
votes
1
reply
731
views
Comment:
Comment: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
8 weeks ago by
Samuel
▴ 20
0
votes
1
reply
731
views
Comment:
Comment: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
updated 8 weeks ago by
GenoMax
142k • written 8 weeks ago by
Samuel
▴ 20
0
votes
1
reply
731
views
Comment:
Comment: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
8 weeks ago by
Samuel
▴ 20
0
votes
1
reply
731
views
Comment:
Comment: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
8 weeks ago by
Samuel
▴ 20
2
votes
10
replies
731
views
Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal samples pair (BAM to VCF)
vaf
gatk
vcf
genomics
mutect2
updated 8 weeks ago by
GenoMax
142k • written 8 weeks ago by
Samuel
▴ 20
3
votes
3
replies
462
views
I can't add VAF from population for all of my variants from VCF file
genomics
vcf
gnomad
updated 8 weeks ago by
Ram
43k • written 8 weeks ago by
Samuel
▴ 20
1
vote
1
reply
462
views
Comment:
Comment: I can't add VAF from population for all of my variants from VCF file
updated 8 weeks ago by
Ram
43k • written 8 weeks ago by
Samuel
▴ 20
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