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Comment: C: How to identify 3'UTR region?
5.6 years ago by michael.ante ★ 4.0k
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2.3k
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Comment: C: featureCounts log: "WARNING contig is not found in the provided genome file!"
5.6 years ago by michael.ante ★ 4.0k
0
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1
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3.5k
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Answer: A: How to interpret the differences of read counts using htseq and feature counts?
5.7 years ago by michael.ante ★ 4.0k
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0
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1.7k
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Comment: C: Would curated pathway gene set better being weighted than being binary
5.7 years ago by michael.ante ★ 4.0k
0
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1
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1.7k
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Comment: C: Would curated pathway gene set better being weighted than being binary
5.7 years ago by michael.ante ★ 4.0k
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0
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2.5k
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Comment: C: Extract sequences from fastA files based on csv chart in R
5.7 years ago by michael.ante ★ 4.0k
0
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1
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2.5k
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Comment: C: Extract sequences from fastA files based on csv chart
5.7 years ago by michael.ante ★ 4.0k
0
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0
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2.1k
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Comment: C: Error in piRNA gtf file while featurecounts step in STAR aligner?
5.7 years ago by michael.ante ★ 4.0k
0
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1
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2.3k
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Comment: C: STAR error (segmentation fault) in Aligning reads
5.7 years ago by michael.ante ★ 4.0k
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2
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3.5k
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Comment: C: FASTQ exctract ID's
5.7 years ago by michael.ante ★ 4.0k
1
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1
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2.3k
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Comment: C: STAR error (segmentation fault) in Aligning reads
5.7 years ago by michael.ante ★ 4.0k
0
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1
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2.1k
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Answer: A: Error in piRNA gtf file while featurecounts step in STAR aligner?
5.7 years ago by michael.ante ★ 4.0k
2
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1
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1.5k
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Answer: C: Scaleable trimming of GenBank sequences?
5.7 years ago by michael.ante ★ 4.0k
0
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0
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1.3k
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Comment: C: Data set containing corresponding RNA-seq and RT-Qpcr data
5.7 years ago by michael.ante ★ 4.0k
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0
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1.9k
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Answer: A: Transcription factor target gene
5.8 years ago by michael.ante ★ 4.0k
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1
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3.6k
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Comment: C: bash loop to count variants using vcftools
updated 5.8 years ago by 45k • written 9.8 years ago by ★ 4.0k
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0
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2.5k
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Comment: C: RNA-SeQC v1.1.8 transcript_id attribute was not found
5.8 years ago by michael.ante ★ 4.0k
1
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1
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3.4k
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Answer: A: two questions in loading data
updated 5.8 years ago by 45k • written 9.8 years ago by ★ 4.0k
0
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1
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2.8k
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Answer: A: Tophat, low alignement left read
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 4.0k
2
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1
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2.4k
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Answer: A: Joining two files with multiple columns
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 4.0k
1
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0
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7.8k
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Comment: C: How to confirm forward primer matches each read without removing primer sequence
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 4.0k
2
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1
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34k
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Comment: C: getting intersect between two lists of genes in R
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 4.0k
1
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1
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34k
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Comment: C: getting intersect between two lists of genes in R
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 4.0k
1
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1
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34k
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Comment: C: getting intersect between two lists of genes in R
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 4.0k
0
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1
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5.2k
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Comment: C: Annotating RNA-Seq exon junctions
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 4.0k
3
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1
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5.1k
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Comment: C: Merge 2 files based on rs number but keep all info only from the first file
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 4.0k
9
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1
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3.5k
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Answer: A: Can FPKM be added?
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 4.0k
3
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1
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3.0k
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Answer: C: awk, copy and paste single line command
updated 5.8 years ago by 89k • written 5.9 years ago by ★ 4.0k
0
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0
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3.2k
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Comment: C: Nothing will align with HTSeq?
updated 5.8 years ago by 45k • written 10.0 years ago by ★ 4.0k
3
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1
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3.5k
views
Answer: A: error in getting sorted bam
updated 5.8 years ago by 45k • written 10.1 years ago by ★ 4.0k
2
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1
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8.7k
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Comment: C: Using featureCount with a GFF file
5.8 years ago by michael.ante ★ 4.0k
1
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1
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8.7k
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Comment: C: Using featureCount with a GFF file
5.8 years ago by michael.ante ★ 4.0k
0
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1
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8.1k
views
Comment: C: Removing barcode and adapters?
updated 5.9 years ago by 45k • written 10.2 years ago by ★ 4.0k
14
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5
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37k
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Answer: A: Converstion of BED with scores into bigWig
updated 5.9 years ago by 45k • written 10.2 years ago by ★ 4.0k
0
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0
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10k
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Comment: C: Bedtools problem : It looks as though you have less than 3 columns at line: 1.
5.9 years ago by michael.ante ★ 4.0k
1
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0
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5.3k
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Comment: C: salmon was only able to assign 0 fragments to transcripts
5.9 years ago by michael.ante ★ 4.0k
0
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1
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3.0k
views
Comment: C: awk, copy and paste single line command
5.9 years ago by michael.ante ★ 4.0k
1
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0
replies
4.3k
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Comment: C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
5.9 years ago by michael.ante ★ 4.0k
0
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1
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4.3k
views
Comment: A: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
5.9 years ago by michael.ante ★ 4.0k
1
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1
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1.8k
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Answer: A: Interpret genome alignment results
5.9 years ago by michael.ante ★ 4.0k
0
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0
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2.7k
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Comment: C: Are reads with the same length and position always "duplicates"
5.9 years ago by michael.ante ★ 4.0k
0
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1
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2.2k
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Comment: C: can I use soft-clip RNA-seq reads to summarize gene counts?
5.9 years ago by michael.ante ★ 4.0k
2
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1
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3.1k
views
Comment: Comment: Which tool/method to use for Raw data quality evaluation and filtering
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.0k
0
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0
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8.3k
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Comment: C: Count matrix from bigwig files - Application
5.9 years ago by michael.ante ★ 4.0k
1
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0
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1.6k
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Comment: C: How to calculate the number of functional proteins in GFF3 file
5.9 years ago by michael.ante ★ 4.0k
0
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1
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3.0k
views
Comment: C: STAR output soft-clipped reads instead of insertion
5.9 years ago by michael.ante ★ 4.0k
2
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1
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5.0k
views
Comment: C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
5.9 years ago by michael.ante ★ 4.0k
1
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1
reply
1.6k
views
Comment: C: How to calculate the number of functional proteins in GFF3 file
5.9 years ago by michael.ante ★ 4.0k
1
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0
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2.6k
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Comment: C: Question about featureCounts
5.9 years ago by michael.ante ★ 4.0k
0
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0
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2.3k
views
Comment: C: Reverse Complement Reads in BAM File
5.9 years ago by michael.ante ★ 4.0k
454 results • Page 2 of 10
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