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7
votes
11
replies
4.6k
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What is the appropriate approach for ChIPseq protein genome occupancy % calculation?
ChIP-Seq
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
0
votes
0
replies
2.5k
views
Answer: A: What do you want to learn about bioinformatics?
5.2 years ago by AlexAbdulkaderKheirallah ▴ 120
1
vote
4
replies
2.5k
views
Forum: What do you want to learn about bioinformatics?
course education
updated 2.5 years ago by 45k • written 6.9 years ago by ▴ 120
0
votes
0
replies
25k
views
Comment: C: What'S The Best Way To View And Explore A Large Gene Ontology Dag?
updated 5.9 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
0
replies
2.5k
views
Comment: C: What do you want to learn about bioinformatics?
6.9 years ago by AlexAbdulkaderKheirallah ▴ 120
16
votes
3
replies
10k
views
How is FDR calculated in MACS?
ChIP-Seq
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
16
votes
5
replies
10k
views
Scatter plot for GSEA results analysis
RNA-Seq
updated 9.3 years ago by ▴ 120 • written 10.0 years ago by ▴ 120
0
votes
0
replies
13k
views
Answer: A: Download all eQTL data for all the 9 tissues from GTEx Portal
9.7 years ago by AlexAbdulkaderKheirallah ▴ 120
1
vote
3
replies
2.4k
views
What are the GRCh37/38 tRNA gene names
gene
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 120
0
votes
1
reply
20k
views
Comment: Comment: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 120
0
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0
replies
3.7k
views
Comment: Comment: How to test statistical significance of ChIPseq enrichment in custom BED regions
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 120
2
votes
3
replies
3.7k
views
How to test statistical significance of ChIPseq enrichment in custom BED regions?
ChIP-Seq
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 120
0
votes
0
replies
4.1k
views
Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 120
0
votes
1
reply
4.1k
views
Comment: C: Meaning of differential promoter use (cuffdiff)
10.3 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
4.1k
views
Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 120
1
vote
3
replies
2.2k
views
QC of ChIPseq data (controlling false negatives)
ChIP-Seq qc
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 120
0
votes
1
reply
4.1k
views
Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 120
0
votes
7
replies
4.1k
views
Meaning of differential promoter use (cuffdiff)
RNA-Seq
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 120
0
votes
0
replies
2.2k
views
Comment: C: QC of ChIPseq data (controlling false negatives)
10.3 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
1
reply
4.6k
views
Comment: Comment: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
0
votes
1
reply
4.6k
views
Comment: C: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
10.4 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
4.6k
views
Comment: C: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
10.4 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
1
reply
4.6k
views
Comment: C: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
10.4 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
4.0k
views
Comment: Comment: Fundamental flaw in ngs.plot - how to overcome?C
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
0
votes
0
replies
5.7k
views
Comment: A: Chip-Seq Enrichment Profile Significance?
10.4 years ago by AlexAbdulkaderKheirallah ▴ 120
3
votes
5
replies
4.0k
views
Fundamental flaw in ngs.plot - how to overcome?C
ChIP-Seq
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
0
votes
0
replies
4.0k
views
Answer: Answer: Fundamental flaw in ngs.plot - how to overcome?C
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
0
votes
0
replies
2.7k
views
Comment: A: How to retrive the number of reads aligned to various genomic features?
updated 10.4 years ago by 11k • written 10.4 years ago by ▴ 120
0
votes
0
replies
2.5k
views
Comment: Comment: Is it necessery to use GTF annotation exlusively for mRNA if sequencing library
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
3
votes
3
replies
2.7k
views
How to retrive the number of reads aligned to various genomic features?
ChIP-Seq
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
0
votes
1
reply
2.5k
views
Comment: Comment: Is it necessery to use GTF annotation exlusively for mRNA if sequencing library
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
2
votes
4
replies
2.5k
views
Is it necessery to use GTF annotation exlusively for mRNA if sequencing library is mRNA enriched?
RNA-Seq
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
0
votes
0
replies
2.7k
views
Comment: C: How to retrive the number of reads aligned to various genomic features?
10.4 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
10k
views
Comment: Comment: How is FDR calculated in MACS?
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 120
1
vote
2
replies
3.9k
views
Read alignment for ChIPseq
ChIP-Seq alignment
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 120
0
votes
1
reply
2.4k
views
Comment: Comment: What are the GRCh37/38 tRNA gene names
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 120
0
votes
0
replies
2.2k
views
Comment: C: Isoform transcript sequence reconstruction
10.7 years ago by AlexAbdulkaderKheirallah ▴ 120
3
votes
2
replies
2.2k
views
Isoform transcript sequence reconstruction
RNA-Seq sequence
updated 10.7 years ago by 105k • written 10.7 years ago by ▴ 120
0
votes
1
reply
9.9k
views
Comment: C: GSEA matrix error appears during analysis
updated 10.9 years ago by 45k • written 10.9 years ago by ▴ 120
0
votes
6
replies
9.9k
views
GSEA matrix error appears during analysis
software-error RNA-Seq
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 120
1
vote
3
replies
3.2k
views
Question about the appropriate FPKM gene expression processing
RNA-Seq
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 120
0
votes
0
replies
3.2k
views
Comment: Comment: Question about the appropriate FPKM gene expression processing
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 120
0
votes
0
replies
9.9k
views
Comment: C: GSEA matrix error appears during analysis
10.9 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
9.9k
views
Comment: C: GSEA matrix error appears during analysis
10.9 years ago by AlexAbdulkaderKheirallah ▴ 120
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