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Comment: Comment: collapsePathways function throwing error
15 days ago by alserg ▴ 830
0
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0
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309
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Comment: Comment: collapsePathways function throwing error
15 days ago by alserg ▴ 830
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1
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309
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Answer: Answer: collapsePathways function throwing error
15 days ago by alserg ▴ 830
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0
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277
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Answer: Answer: how to convert kegg ids to gene names
6 months ago by alserg ▴ 830
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1
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377
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Comment: Comment: Get distribution of enrichment scores across all permutations in fgsea
6 months ago by alserg ▴ 830
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567
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Comment: Comment: Finding differential subpathways of metabolic networks using RNA-seq data
9 months ago by alserg ▴ 830
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1
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932
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Answer: Answer: fgsea resulting in an empty datafram
9 months ago by alserg ▴ 830
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1
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468
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Comment: Comment: Query Modules from KEGG
15 months ago by alserg ▴ 830
1
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1
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567
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Answer: Answer: Finding differential subpathways of metabolic networks using RNA-seq data
16 months ago by alserg ▴ 830
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1.3k
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Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
20 months ago by alserg ▴ 830
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2
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1.3k
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Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
20 months ago by alserg ▴ 830
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1
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1.3k
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Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
20 months ago by alserg ▴ 830
2
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0
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4.8k
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Comment: Comment: Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$mod
21 months ago by alserg ▴ 830
3
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0
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4.8k
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Comment: Comment: Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$mod
21 months ago by alserg ▴ 830
1
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0
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2.2k
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Answer: A: GSEA pvalue output of 0.0. Can I make it more specific?
2.1 years ago by alserg ▴ 830
6
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1
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3.0k
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Answer: A: fgsea: What does fgseaMultilevel argument sampleSize mean/when to change it?
2.3 years ago by alserg ▴ 830
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0
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2.9k
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Comment: C: Thousands of significant differentially expressed genes but no significant enric
2.4 years ago by alserg ▴ 830
1
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1
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2.9k
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Comment: C: Thousands of significant differentially expressed genes but no significant enric
2.4 years ago by alserg ▴ 830
2
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0
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2.1k
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Comment: C: optimal size of gene sets for fgsea analysis
2.6 years ago by alserg ▴ 830
2
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1
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2.1k
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Answer: A: optimal size of gene sets for fgsea analysis
2.6 years ago by alserg ▴ 830
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0
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2.9k
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Comment: C: fgsea nMoreExtreme meaning
2.8 years ago by alserg ▴ 830
8
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1
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2.9k
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Answer: A: fgsea nMoreExtreme meaning
updated 2.8 years ago by 71k • written 2.8 years ago by ▴ 830
1
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0
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2.9k
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Comment: C: fgsea nMoreExtreme meaning
2.8 years ago by alserg ▴ 830
1
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0
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2.1k
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Comment: C: GSEA on preranked list with weighted enrichment statistic (exponent=1) in R
3.0 years ago by alserg ▴ 830
1
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1
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4.5k
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Comment: C: How to view all KEGG reactions?
3.1 years ago by alserg ▴ 830
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0
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6.3k
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Comment: C: GSEA PreRanked lists from DESeq2 results table
3.1 years ago by alserg ▴ 830
9
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3
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4.4k
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News: Bioinformatics Contest 2020. Call for problems
contest News
3.1 years ago by alserg ▴ 830
1
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0
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4.4k
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Comment: C: Bioinformatics Contest 2020. Call for problems
3.1 years ago by alserg ▴ 830
0
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0
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1.3k
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Answer: A: GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
3.1 years ago by alserg ▴ 830
0
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1
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6.3k
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Comment: C: GSEA PreRanked lists from DESeq2 results table
3.1 years ago by alserg ▴ 830
0
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1
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6.3k
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Comment: C: GSEA PreRanked lists from DESeq2 results table
3.1 years ago by alserg ▴ 830
5
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2
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6.3k
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Answer: A: GSEA PreRanked lists from DESeq2 results table
3.1 years ago by alserg ▴ 830
6
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1
reply
2.8k
views
Answer: A: fGSEA result to csv
3.3 years ago by alserg ▴ 830
1
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1
reply
2.9k
views
Answer: A: Thousands of significant differentially expressed genes but no significant enric
3.3 years ago by alserg ▴ 830
1
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1
reply
2.5k
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Comment: C: Bonferroni multiple corrections question
3.5 years ago by alserg ▴ 830
1
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0
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3.1k
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Answer: A: Getting all gene members in a Reactome Pathway
3.7 years ago by alserg ▴ 830
0
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0
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1.8k
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Answer: A: PCA on RNAseq time series data
3.7 years ago by alserg ▴ 830
4
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1
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3.6k
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Answer: A: Need help choosing genes and calculating ranks for GSEA rank file
3.7 years ago by alserg ▴ 830
3
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0
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1.9k
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Tool: Phanantasus: a web-application for exploratory gene expression analysis and visualization
gene expression geo heatmap rna-seq microarray Tool
3.7 years ago by alserg ▴ 830
0
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0
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1.5k
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Answer: A: Max/min value of enrichment score
3.8 years ago by alserg ▴ 830
1
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0
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1.4k
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Answer: A: Preranked GSEA statistics
3.8 years ago by alserg ▴ 830
0
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1
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2.1k
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Answer: A: GSEA on preranked list with weighted enrichment statistic (exponent=1) in R
4.0 years ago by alserg ▴ 830
1
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0
replies
1.1k
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Comment: C: Pathway test for reversal of effect (three-condition comparison)
4.7 years ago by alserg ▴ 830
1
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1
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1.1k
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Answer: A: Pathway test for reversal of effect (three-condition comparison)
4.7 years ago by alserg ▴ 830
3
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0
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1.1k
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Answer: A: Is there a name for these charts?
5.0 years ago by alserg ▴ 830
1
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0
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4.7k
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Answer: A: Cut-off for genesets in GSEA
5.4 years ago by alserg ▴ 830
3
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0
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4.4k
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Answer: A: How to handle the 'Inf' and '-Inf' in cufflinks output when use clusterprofiler
5.4 years ago by alserg ▴ 830
2
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0
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8.1k
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Comment: C: GSEA following DESeq2
5.7 years ago by alserg ▴ 830
0
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0
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4.3k
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Comment: C: How do I obtain germline mutation for TCGA samples?
5.7 years ago by alserg ▴ 830
1
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0
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4.6k
views
Answer: A: Input all the ranked genes into pre-ranked GSEA?
5.8 years ago by alserg ▴ 830
58 results • Page 1 of 2
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