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2
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674
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Answer: Answer: KEGG pathways
4 months ago by alserg ▴ 1000
1
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1
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1.1k
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Comment: Comment: Permutations FGSEA
5 months ago by alserg ▴ 1000
1
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1
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1.1k
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Comment: Comment: Permutations FGSEA
5 months ago by alserg ▴ 1000
2
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1
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1.1k
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Answer: Answer: Permutations FGSEA
5 months ago by alserg ▴ 1000
1
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0
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1.1k
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Answer: Answer: Downloading RNAseq datasets from GEO into R
7 months ago by alserg ▴ 1000
2
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0
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1.3k
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Answer: Answer: GSEA on non-model organisms: How to handle duplicated KEGG KO
11 months ago by alserg ▴ 1000
1
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1
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1.8k
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Comment: Comment: Help in choosing the right metric for ranking genes in fgsea
14 months ago by alserg ▴ 1000
3
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2
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1.8k
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Answer: Answer: Help in choosing the right metric for ranking genes in fgsea
14 months ago by alserg ▴ 1000
2
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2
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2.1k
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Answer: Answer: Ties in reranked list
18 months ago by alserg ▴ 1000
0
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0
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4.4k
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Comment: Comment: collapsePathways function throwing error
2.0 years ago by alserg ▴ 1000
0
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0
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4.4k
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Comment: Comment: collapsePathways function throwing error
2.0 years ago by alserg ▴ 1000
0
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1
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4.4k
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Answer: Answer: collapsePathways function throwing error
2.0 years ago by alserg ▴ 1000
0
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0
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852
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Answer: Answer: how to convert kegg ids to gene names
2.5 years ago by alserg ▴ 1000
0
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1
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1.1k
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Comment: Comment: Get distribution of enrichment scores across all permutations in fgsea
2.5 years ago by alserg ▴ 1000
0
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0
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1.1k
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Comment: Comment: Finding differential subpathways of metabolic networks using RNA-seq data
2.8 years ago by alserg ▴ 1000
1
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1
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2.6k
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Answer: Answer: fgsea resulting in an empty datafram
2.8 years ago by alserg ▴ 1000
0
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1
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929
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Comment: Comment: Query Modules from KEGG
3.3 years ago by alserg ▴ 1000
1
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1
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1.1k
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Answer: Answer: Finding differential subpathways of metabolic networks using RNA-seq data
3.3 years ago by alserg ▴ 1000
0
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0
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3.0k
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Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
3.6 years ago by alserg ▴ 1000
0
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2
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3.0k
views
Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
3.6 years ago by alserg ▴ 1000
0
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1
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3.0k
views
Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
3.6 years ago by alserg ▴ 1000
2
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0
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9.9k
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Comment: Comment: Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$mod
3.7 years ago by alserg ▴ 1000
3
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0
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9.9k
views
Comment: Comment: Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$mod
3.7 years ago by alserg ▴ 1000
1
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0
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4.0k
views
Answer: A: GSEA pvalue output of 0.0. Can I make it more specific?
4.1 years ago by alserg ▴ 1000
6
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1
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5.7k
views
Answer: A: fgsea: What does fgseaMultilevel argument sampleSize mean/when to change it?
4.3 years ago by alserg ▴ 1000
0
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0
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5.3k
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Comment: C: Thousands of significant differentially expressed genes but no significant enric
4.4 years ago by alserg ▴ 1000
1
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1
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5.3k
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Comment: C: Thousands of significant differentially expressed genes but no significant enric
4.4 years ago by alserg ▴ 1000
2
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0
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4.1k
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Comment: C: optimal size of gene sets for fgsea analysis
4.6 years ago by alserg ▴ 1000
2
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1
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4.1k
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Answer: A: optimal size of gene sets for fgsea analysis
4.6 years ago by alserg ▴ 1000
0
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0
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4.9k
views
Comment: C: fgsea nMoreExtreme meaning
4.8 years ago by alserg ▴ 1000
8
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1
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4.9k
views
Answer: A: fgsea nMoreExtreme meaning
updated 4.8 years ago by 87k • written 4.8 years ago by ▴ 1000
1
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0
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4.9k
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Comment: C: fgsea nMoreExtreme meaning
4.8 years ago by alserg ▴ 1000
1
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0
replies
3.1k
views
Comment: C: GSEA on preranked list with weighted enrichment statistic (exponent=1) in R
5.0 years ago by alserg ▴ 1000
1
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1
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6.0k
views
Comment: C: How to view all KEGG reactions?
5.1 years ago by alserg ▴ 1000
0
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0
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11k
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Comment: C: GSEA PreRanked lists from DESeq2 results table
5.1 years ago by alserg ▴ 1000
9
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3
replies
5.2k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 22 months ago by 45k • written 5.5 years ago by ▴ 1000
1
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0
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5.2k
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Comment: C: Bioinformatics Contest 2020. Call for problems
5.1 years ago by alserg ▴ 1000
0
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0
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2.0k
views
Answer: A: GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
5.1 years ago by alserg ▴ 1000
0
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1
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11k
views
Comment: C: GSEA PreRanked lists from DESeq2 results table
5.1 years ago by alserg ▴ 1000
0
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1
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11k
views
Comment: C: GSEA PreRanked lists from DESeq2 results table
5.1 years ago by alserg ▴ 1000
6
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2
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11k
views
Answer: A: GSEA PreRanked lists from DESeq2 results table
5.1 years ago by alserg ▴ 1000
7
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1
reply
4.3k
views
Answer: A: fGSEA result to csv
5.3 years ago by alserg ▴ 1000
1
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1
reply
5.3k
views
Answer: A: Thousands of significant differentially expressed genes but no significant enric
5.3 years ago by alserg ▴ 1000
1
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1
reply
3.8k
views
Comment: C: Bonferroni multiple corrections question
5.4 years ago by alserg ▴ 1000
1
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0
replies
5.5k
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Answer: A: Getting all gene members in a Reactome Pathway
5.7 years ago by alserg ▴ 1000
0
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0
replies
2.8k
views
Answer: A: PCA on RNAseq time series data
5.7 years ago by alserg ▴ 1000
4
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1
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5.1k
views
Answer: A: Need help choosing genes and calculating ranks for GSEA rank file
5.7 years ago by alserg ▴ 1000
3
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0
replies
2.3k
views
Tool: Phanantasus: a web-application for exploratory gene expression analysis and visualization
geo microarray rna-seq heatmap gene-expression
updated 21 months ago by 45k • written 5.7 years ago by ▴ 1000
0
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0
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2.2k
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Answer: A: Max/min value of enrichment score
5.7 years ago by alserg ▴ 1000
1
vote
0
replies
1.9k
views
Answer: A: Preranked GSEA statistics
5.8 years ago by alserg ▴ 1000
67 results • Page 1 of 2
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