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2
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1
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1.3k
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Answer: Answer: KEGG pathways
11 months ago by alserg ★ 1.0k
1
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1
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2.1k
views
Comment: Comment: Permutations FGSEA
12 months ago by alserg ★ 1.0k
1
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1
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2.1k
views
Comment: Comment: Permutations FGSEA
12 months ago by alserg ★ 1.0k
2
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1
reply
2.1k
views
Answer: Answer: Permutations FGSEA
12 months ago by alserg ★ 1.0k
1
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0
replies
2.3k
views
Answer: Answer: Downloading RNAseq datasets from GEO into R
15 months ago by alserg ★ 1.0k
2
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0
replies
2.5k
views
Answer: Answer: GSEA on non-model organisms: How to handle duplicated KEGG KO
19 months ago by alserg ★ 1.0k
1
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1
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3.2k
views
Comment: Comment: Help in choosing the right metric for ranking genes in fgsea
21 months ago by alserg ★ 1.0k
3
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2
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3.2k
views
Answer: Answer: Help in choosing the right metric for ranking genes in fgsea
21 months ago by alserg ★ 1.0k
2
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2
replies
3.2k
views
Answer: Answer: Ties in reranked list
2.1 years ago by alserg ★ 1.0k
0
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0
replies
5.5k
views
Comment: Comment: collapsePathways function throwing error
2.6 years ago by alserg ★ 1.0k
0
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0
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5.5k
views
Comment: Comment: collapsePathways function throwing error
2.6 years ago by alserg ★ 1.0k
0
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1
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5.5k
views
Answer: Answer: collapsePathways function throwing error
2.6 years ago by alserg ★ 1.0k
0
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0
replies
1.1k
views
Answer: Answer: how to convert kegg ids to gene names
3.1 years ago by alserg ★ 1.0k
0
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1
reply
1.4k
views
Comment: Comment: Get distribution of enrichment scores across all permutations in fgsea
3.1 years ago by alserg ★ 1.0k
0
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0
replies
1.3k
views
Comment: Comment: Finding differential subpathways of metabolic networks using RNA-seq data
3.4 years ago by alserg ★ 1.0k
1
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1
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3.1k
views
Answer: Answer: fgsea resulting in an empty datafram
3.4 years ago by alserg ★ 1.0k
0
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1
reply
1.2k
views
Comment: Comment: Query Modules from KEGG
3.9 years ago by alserg ★ 1.0k
1
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1
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1.3k
views
Answer: Answer: Finding differential subpathways of metabolic networks using RNA-seq data
3.9 years ago by alserg ★ 1.0k
0
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0
replies
3.5k
views
Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
4.2 years ago by alserg ★ 1.0k
0
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2
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3.5k
views
Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
4.2 years ago by alserg ★ 1.0k
0
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1
reply
3.5k
views
Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
4.2 years ago by alserg ★ 1.0k
2
votes
0
replies
11k
views
Comment: Comment: Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$mod
4.3 years ago by alserg ★ 1.0k
3
votes
0
replies
11k
views
Comment: Comment: Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$mod
4.3 years ago by alserg ★ 1.0k
1
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0
replies
4.7k
views
Answer: A: GSEA pvalue output of 0.0. Can I make it more specific?
4.7 years ago by alserg ★ 1.0k
8
votes
1
reply
6.9k
views
Answer: A: fgsea: What does fgseaMultilevel argument sampleSize mean/when to change it?
4.9 years ago by alserg ★ 1.0k
0
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0
replies
6.5k
views
Comment: C: Thousands of significant differentially expressed genes but no significant enric
5.0 years ago by alserg ★ 1.0k
1
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1
reply
6.5k
views
Comment: C: Thousands of significant differentially expressed genes but no significant enric
5.0 years ago by alserg ★ 1.0k
2
votes
0
replies
5.1k
views
Comment: C: optimal size of gene sets for fgsea analysis
5.2 years ago by alserg ★ 1.0k
2
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1
reply
5.1k
views
Answer: A: optimal size of gene sets for fgsea analysis
5.2 years ago by alserg ★ 1.0k
0
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0
replies
5.8k
views
Comment: C: fgsea nMoreExtreme meaning
5.4 years ago by alserg ★ 1.0k
8
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1
reply
5.8k
views
Answer: A: fgsea nMoreExtreme meaning
updated 5.4 years ago by 89k • written 5.4 years ago by ★ 1.0k
1
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0
replies
5.8k
views
Comment: C: fgsea nMoreExtreme meaning
5.4 years ago by alserg ★ 1.0k
1
vote
0
replies
3.6k
views
Comment: C: GSEA on preranked list with weighted enrichment statistic (exponent=1) in R
5.6 years ago by alserg ★ 1.0k
1
vote
1
reply
7.0k
views
Comment: C: How to view all KEGG reactions?
5.7 years ago by alserg ★ 1.0k
0
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0
replies
12k
views
Comment: C: GSEA PreRanked lists from DESeq2 results table
5.7 years ago by alserg ★ 1.0k
9
votes
3
replies
5.5k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 2.4 years ago by 45k • written 6.1 years ago by ★ 1.0k
1
vote
0
replies
5.5k
views
Comment: C: Bioinformatics Contest 2020. Call for problems
5.7 years ago by alserg ★ 1.0k
0
votes
0
replies
2.2k
views
Answer: A: GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
5.7 years ago by alserg ★ 1.0k
0
votes
1
reply
12k
views
Comment: C: GSEA PreRanked lists from DESeq2 results table
5.7 years ago by alserg ★ 1.0k
0
votes
1
reply
12k
views
Comment: C: GSEA PreRanked lists from DESeq2 results table
5.7 years ago by alserg ★ 1.0k
6
votes
2
replies
12k
views
Answer: A: GSEA PreRanked lists from DESeq2 results table
5.7 years ago by alserg ★ 1.0k
7
votes
1
reply
4.9k
views
Answer: A: fGSEA result to csv
5.9 years ago by alserg ★ 1.0k
1
vote
1
reply
6.5k
views
Answer: A: Thousands of significant differentially expressed genes but no significant enric
5.9 years ago by alserg ★ 1.0k
1
vote
1
reply
4.4k
views
Comment: C: Bonferroni multiple corrections question
6.0 years ago by alserg ★ 1.0k
1
vote
0
replies
6.4k
views
Answer: A: Getting all gene members in a Reactome Pathway
6.3 years ago by alserg ★ 1.0k
0
votes
0
replies
3.3k
views
Answer: A: PCA on RNAseq time series data
6.3 years ago by alserg ★ 1.0k
4
votes
1
reply
6.1k
views
Answer: A: Need help choosing genes and calculating ranks for GSEA rank file
6.3 years ago by alserg ★ 1.0k
3
votes
0
replies
2.5k
views
Tool: Phanantasus: a web-application for exploratory gene expression analysis and visualization
geo microarray rna-seq heatmap gene-expression
updated 2.4 years ago by 45k • written 6.3 years ago by ★ 1.0k
0
votes
0
replies
2.4k
views
Answer: A: Max/min value of enrichment score
6.4 years ago by alserg ★ 1.0k
1
vote
0
replies
2.1k
views
Answer: A: Preranked GSEA statistics
6.4 years ago by alserg ★ 1.0k
67 results • Page 1 of 2
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