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2
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352
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Answer: Answer: GSEA on non-model organisms: How to handle duplicated KEGG KO
23 days ago by alserg ▴ 920
1
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1
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569
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Comment: Comment: Help in choosing the right metric for ranking genes in fgsea
3 months ago by alserg ▴ 920
3
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2
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569
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Answer: Answer: Help in choosing the right metric for ranking genes in fgsea
3 months ago by alserg ▴ 920
2
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2
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1.0k
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Answer: Answer: Ties in reranked list
7 months ago by alserg ▴ 920
0
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0
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2.4k
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Comment: Comment: collapsePathways function throwing error
13 months ago by alserg ▴ 920
0
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0
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2.4k
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Comment: Comment: collapsePathways function throwing error
13 months ago by alserg ▴ 920
0
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1
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2.4k
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Answer: Answer: collapsePathways function throwing error
13 months ago by alserg ▴ 920
0
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0
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576
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Answer: Answer: how to convert kegg ids to gene names
19 months ago by alserg ▴ 920
0
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1
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742
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Comment: Comment: Get distribution of enrichment scores across all permutations in fgsea
19 months ago by alserg ▴ 920
0
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0
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824
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Comment: Comment: Finding differential subpathways of metabolic networks using RNA-seq data
22 months ago by alserg ▴ 920
1
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1
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1.9k
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Answer: Answer: fgsea resulting in an empty datafram
22 months ago by alserg ▴ 920
0
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1
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708
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Comment: Comment: Query Modules from KEGG
2.4 years ago by alserg ▴ 920
1
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1
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824
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Answer: Answer: Finding differential subpathways of metabolic networks using RNA-seq data
2.4 years ago by alserg ▴ 920
0
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0
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2.1k
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Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
2.7 years ago by alserg ▴ 920
0
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2
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2.1k
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Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
2.7 years ago by alserg ▴ 920
0
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1
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2.1k
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Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
2.7 years ago by alserg ▴ 920
2
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0
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8.3k
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Comment: Comment: Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$mod
2.8 years ago by alserg ▴ 920
3
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0
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8.3k
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Comment: Comment: Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$mod
2.8 years ago by alserg ▴ 920
1
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0
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3.2k
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Answer: A: GSEA pvalue output of 0.0. Can I make it more specific?
3.2 years ago by alserg ▴ 920
6
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1
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4.3k
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Answer: A: fgsea: What does fgseaMultilevel argument sampleSize mean/when to change it?
3.4 years ago by alserg ▴ 920
0
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0
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4.1k
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Comment: C: Thousands of significant differentially expressed genes but no significant enric
3.5 years ago by alserg ▴ 920
1
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1
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4.1k
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Comment: C: Thousands of significant differentially expressed genes but no significant enric
3.5 years ago by alserg ▴ 920
2
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0
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3.0k
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Comment: C: optimal size of gene sets for fgsea analysis
3.7 years ago by alserg ▴ 920
2
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1
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3.0k
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Answer: A: optimal size of gene sets for fgsea analysis
3.7 years ago by alserg ▴ 920
0
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0
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3.9k
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Comment: C: fgsea nMoreExtreme meaning
3.9 years ago by alserg ▴ 920
8
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1
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3.9k
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Answer: A: fgsea nMoreExtreme meaning
updated 3.9 years ago by 82k • written 3.9 years ago by ▴ 920
1
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0
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3.9k
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Comment: C: fgsea nMoreExtreme meaning
3.9 years ago by alserg ▴ 920
1
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0
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2.6k
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Comment: C: GSEA on preranked list with weighted enrichment statistic (exponent=1) in R
4.1 years ago by alserg ▴ 920
1
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1
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5.2k
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Comment: C: How to view all KEGG reactions?
4.2 years ago by alserg ▴ 920
0
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0
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8.6k
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Comment: C: GSEA PreRanked lists from DESeq2 results table
4.2 years ago by alserg ▴ 920
9
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3
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4.8k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 11 months ago by 43k • written 4.6 years ago by ▴ 920
1
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0
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4.8k
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Comment: C: Bioinformatics Contest 2020. Call for problems
4.2 years ago by alserg ▴ 920
0
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0
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1.7k
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Answer: A: GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
4.2 years ago by alserg ▴ 920
0
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1
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8.6k
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Comment: C: GSEA PreRanked lists from DESeq2 results table
4.2 years ago by alserg ▴ 920
0
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1
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8.6k
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Comment: C: GSEA PreRanked lists from DESeq2 results table
4.2 years ago by alserg ▴ 920
6
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2
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8.6k
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Answer: A: GSEA PreRanked lists from DESeq2 results table
4.2 years ago by alserg ▴ 920
6
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1
reply
3.6k
views
Answer: A: fGSEA result to csv
4.4 years ago by alserg ▴ 920
1
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1
reply
4.1k
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Answer: A: Thousands of significant differentially expressed genes but no significant enric
4.4 years ago by alserg ▴ 920
1
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1
reply
3.1k
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Comment: C: Bonferroni multiple corrections question
4.5 years ago by alserg ▴ 920
1
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0
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4.4k
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Answer: A: Getting all gene members in a Reactome Pathway
4.8 years ago by alserg ▴ 920
0
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0
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2.3k
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Answer: A: PCA on RNAseq time series data
4.8 years ago by alserg ▴ 920
4
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1
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4.4k
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Answer: A: Need help choosing genes and calculating ranks for GSEA rank file
4.8 years ago by alserg ▴ 920
3
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0
replies
2.2k
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Tool: Phanantasus: a web-application for exploratory gene expression analysis and visualization
geo microarray rna-seq heatmap gene-expression
updated 10 months ago by 43k • written 4.8 years ago by ▴ 920
0
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0
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1.8k
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Answer: A: Max/min value of enrichment score
4.8 years ago by alserg ▴ 920
1
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0
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1.7k
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Answer: A: Preranked GSEA statistics
4.9 years ago by alserg ▴ 920
0
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1
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2.6k
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Answer: A: GSEA on preranked list with weighted enrichment statistic (exponent=1) in R
5.1 years ago by alserg ▴ 920
1
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0
replies
1.4k
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Comment: C: Pathway test for reversal of effect (three-condition comparison)
5.7 years ago by alserg ▴ 920
1
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1
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1.4k
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Answer: A: Pathway test for reversal of effect (three-condition comparison)
5.8 years ago by alserg ▴ 920
3
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0
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1.2k
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Answer: A: Is there a name for these charts?
6.1 years ago by alserg ▴ 920
1
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0
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5.7k
views
Answer: A: Cut-off for genesets in GSEA
6.5 years ago by alserg ▴ 920
62 results • Page 1 of 2
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