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Answer: A: No rule keywords allowed after run in snakefile
4.2 years ago by Thibault D. ▴ 700
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8.7k
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Answer: A: STAR alignment EXITING because of FATAL ERROR: could not create output file
4.3 years ago by Thibault D. ▴ 700
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1.5k
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Comment: C: Biology student new to genetic bioinformatics
updated 4.4 years ago by 43k • written 8.3 years ago by ▴ 700
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3.6k
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Comment: C: fGSEA result to csv
4.4 years ago by Thibault D. ▴ 700
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4.5k
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Answer: A: If/else statement in Snakemake rule
4.4 years ago by Thibault D. ▴ 700
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1.5k
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Comment: C: If I am in a right way in RNA-seq
4.6 years ago by Thibault D. ▴ 700
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1.5k
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Comment: C: If I am in a right way in RNA-seq
4.6 years ago by Thibault D. ▴ 700
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1.5k
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Comment: C: If I am in a right way in RNA-seq
4.6 years ago by Thibault D. ▴ 700
9
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1.5k
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Answer: C: If I am in a right way in RNA-seq
4.6 years ago by Thibault D. ▴ 700
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2
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8.4k
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Answer: A: Snakemake input and wildcards
4.6 years ago by Thibault D. ▴ 700
2
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1.2k
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Answer: A: When (not to) pre-build a STAR index
4.7 years ago by Thibault D. ▴ 700
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1
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1.4k
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Kissplice2refgenome does not handle # in the very begining of GTF files
kissplice gtf RNA-Seq
updated 4.8 years ago by ▴ 150 • written 6.5 years ago by ▴ 700
2
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1
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1.9k
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R formula in RNA-Seq differential analysis with multiple parameters
RNA-Seq R Deseq2 Sleuth Statistics
updated 4.9 years ago by 20 • written 6.4 years ago by ▴ 700
1
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0
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1.3k
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Comment: C: SARTools and batch effects
5.9 years ago by Thibault D. ▴ 700
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961
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Answer: A: STAR alignment command.
5.9 years ago by Thibault D. ▴ 700
3
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3.7k
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Comment: C: building index with HISAT2
6.0 years ago by Thibault D. ▴ 700
3
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1
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3.7k
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Answer: A: building index with HISAT2
6.0 years ago by Thibault D. ▴ 700
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1
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1.6k
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Answer: A: Python script error
6.3 years ago by Thibault D. ▴ 700
1
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33k
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Comment: C: In simple words - what is k-mer??
6.4 years ago by Thibault D. ▴ 700
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1.2k
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Answer: A: How to add new operation terms to EDAM ontology
6.9 years ago by Thibault D. ▴ 700
0
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2.4k
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Comment: C: Volcano plot from Posterior probabilities instead of p-value
7.6 years ago by Thibault D. ▴ 700
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2
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2.4k
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Volcano plot from Posterior probabilities instead of p-value
statistics volcano plots posterior probability
7.6 years ago by Thibault D. ▴ 700
4
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2
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5.3k
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Why does TopHat return wrong XS-Strand attribute in BAM ?
TopHat RNA-Seq XS-Strand-Attribute
updated 23 months ago by 43k • written 9.1 years ago by ▴ 700
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5.1k
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Comment: C: differential gene expression using sleuth
8.0 years ago by Thibault D. ▴ 700
0
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1
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5.1k
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Comment: C: differential gene expression using sleuth
8.1 years ago by Thibault D. ▴ 700
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1
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5.1k
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Answer: A: differential gene expression using sleuth
8.1 years ago by Thibault D. ▴ 700
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1
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2.4k
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Comment: C: RNAseq problems with tophat
8.1 years ago by Thibault D. ▴ 700
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4.3k
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Answer: A: GFF3 file format
8.2 years ago by Thibault D. ▴ 700
2
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0
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2.6k
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Answer: A: Tool for simulating stranded RNA-Seq data
8.2 years ago by Thibault D. ▴ 700
0
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1
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4.3k
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Comment: C: How to download intronic positions from Ensembl
8.2 years ago by Thibault D. ▴ 700
2
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0
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2.2k
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Understanding MMDiff output files
RNA-Seq Statistics MMDiff MMSeq
updated 20 months ago by 43k • written 8.3 years ago by ▴ 700
3
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1
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7.7k
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Answer: A: featureCounts, strand specificity, reversely stranded
8.3 years ago by Thibault D. ▴ 700
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2.7k
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Comment: C: problem with cuffmerge
8.3 years ago by Thibault D. ▴ 700
0
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1
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14k
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Comment: C: STAR Aligner minimum read-length
8.3 years ago by Thibault D. ▴ 700
2
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0
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7.7k
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Comment: C: de novo sequence assembly with extremely high coverage
8.4 years ago by Thibault D. ▴ 700
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0
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1.8k
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Answer: A: Finding the largest possible combination of mutations
8.4 years ago by Thibault D. ▴ 700
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1
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1.8k
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Comment: C: Finding the largest possible combination of mutations
8.4 years ago by Thibault D. ▴ 700
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1
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2.7k
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Answer: A: Differential expression analysis of transcriptome data
8.4 years ago by Thibault D. ▴ 700
4
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1
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2.5k
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Why does MMSeq advises against the use of Bowtie2 ?
RNA-Seq Bowtie2 MMSeq Bowtie alignment
updated 8.4 years ago by 104k • written 8.4 years ago by ▴ 700
2
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0
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2.5k
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Answer: A: Bowtie2 reporting alignments count
8.4 years ago by Thibault D. ▴ 700
0
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0
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7.9k
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Comment: C: How to find intron co-ordinates from the gff file?
8.4 years ago by Thibault D. ▴ 700
0
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0
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3.3k
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Comment: C: Normalization in RNA-seq
8.5 years ago by Thibault D. ▴ 700
0
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1
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9.3k
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Answer: A: How long time it typical takes to do a alignment on a human chromosome fastq fil
8.5 years ago by Thibault D. ▴ 700
0
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0
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14k
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Comment: C: Bowtie2 vs Tophat Whats the difference
8.5 years ago by Thibault D. ▴ 700
5
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2
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14k
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Answer: A: Bowtie2 vs Tophat Whats the difference
8.5 years ago by Thibault D. ▴ 700
5
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1
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7.4k
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Answer: Answer: Cuffmerge or Cuffcompare?!
updated 2.3 years ago by 43k • written 8.5 years ago by ▴ 700
0
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2.1k
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Comment: C: Unstranded new transcript from Cuffmerge leads to error while RSEM prepares the
8.6 years ago by Thibault D. ▴ 700
1
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2
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2.1k
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Unstranded new transcript from Cuffmerge leads to error while RSEM prepares the reference
RNA-Seq RSEM Cuffmerge
updated 8.6 years ago by 104k • written 8.6 years ago by ▴ 700
0
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0
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8.7k
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Comment: C: use gff3 file with featureCount
8.7 years ago by Thibault D. ▴ 700
0
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0
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1.1k
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Comment: C: differentially expressed genes
8.8 years ago by Thibault D. ▴ 700
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