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Answer: A: No rule keywords allowed after run in snakefile
5.6 years ago by Thibault D. ▴ 700
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11k
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Answer: A: STAR alignment EXITING because of FATAL ERROR: could not create output file
5.8 years ago by Thibault D. ▴ 700
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1.7k
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Comment: C: Biology student new to genetic bioinformatics
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 700
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4.8k
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Comment: C: fGSEA result to csv
5.8 years ago by Thibault D. ▴ 700
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5.4k
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Answer: A: If/else statement in Snakemake rule
5.8 years ago by Thibault D. ▴ 700
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2.4k
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Comment: C: If I am in a right way in RNA-seq
6.0 years ago by Thibault D. ▴ 700
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2.4k
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Comment: C: If I am in a right way in RNA-seq
6.0 years ago by Thibault D. ▴ 700
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2.4k
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Comment: C: If I am in a right way in RNA-seq
6.0 years ago by Thibault D. ▴ 700
9
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2.4k
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Answer: C: If I am in a right way in RNA-seq
6.0 years ago by Thibault D. ▴ 700
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2
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9.8k
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Answer: A: Snakemake input and wildcards
6.1 years ago by Thibault D. ▴ 700
2
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1.5k
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Answer: A: When (not to) pre-build a STAR index
6.1 years ago by Thibault D. ▴ 700
1
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1
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1.7k
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Kissplice2refgenome does not handle # in the very begining of GTF files
kissplice gtf RNA-Seq
updated 6.2 years ago by ▴ 150 • written 8.0 years ago by ▴ 700
2
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1
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2.2k
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R formula in RNA-Seq differential analysis with multiple parameters
RNA-Seq R Deseq2 Sleuth Statistics
updated 6.4 years ago by 20 • written 7.8 years ago by ▴ 700
1
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0
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1.5k
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Comment: C: SARTools and batch effects
7.3 years ago by Thibault D. ▴ 700
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0
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1.2k
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Answer: A: STAR alignment command.
7.3 years ago by Thibault D. ▴ 700
3
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1
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4.7k
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Comment: C: building index with HISAT2
7.4 years ago by Thibault D. ▴ 700
3
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1
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4.7k
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Answer: A: building index with HISAT2
7.4 years ago by Thibault D. ▴ 700
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1
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2.2k
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Answer: A: Python script error
7.7 years ago by Thibault D. ▴ 700
1
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49k
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Comment: C: In simple words - what is k-mer??
7.8 years ago by Thibault D. ▴ 700
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1.5k
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Answer: A: How to add new operation terms to EDAM ontology
8.3 years ago by Thibault D. ▴ 700
0
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0
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2.7k
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Comment: C: Volcano plot from Posterior probabilities instead of p-value
9.0 years ago by Thibault D. ▴ 700
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2
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2.7k
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Volcano plot from Posterior probabilities instead of p-value
statistics volcano plots posterior probability
9.0 years ago by Thibault D. ▴ 700
4
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2
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5.8k
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Why does TopHat return wrong XS-Strand attribute in BAM ?
TopHat RNA-Seq XS-Strand-Attribute
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 700
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5.9k
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Comment: C: differential gene expression using sleuth
9.5 years ago by Thibault D. ▴ 700
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1
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5.9k
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Comment: C: differential gene expression using sleuth
9.5 years ago by Thibault D. ▴ 700
2
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1
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5.9k
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Answer: A: differential gene expression using sleuth
9.5 years ago by Thibault D. ▴ 700
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1
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3.3k
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Comment: C: RNAseq problems with tophat
9.5 years ago by Thibault D. ▴ 700
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5.3k
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Answer: A: GFF3 file format
9.6 years ago by Thibault D. ▴ 700
2
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0
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3.0k
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Answer: A: Tool for simulating stranded RNA-Seq data
9.6 years ago by Thibault D. ▴ 700
0
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1
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5.2k
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Comment: C: How to download intronic positions from Ensembl
9.7 years ago by Thibault D. ▴ 700
2
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0
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2.4k
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Understanding MMDiff output files
RNA-Seq Statistics MMDiff MMSeq
updated 3.1 years ago by 45k • written 9.7 years ago by ▴ 700
3
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1
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8.6k
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Answer: A: featureCounts, strand specificity, reversely stranded
9.7 years ago by Thibault D. ▴ 700
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3.0k
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Comment: C: problem with cuffmerge
9.7 years ago by Thibault D. ▴ 700
0
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1
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16k
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Comment: C: STAR Aligner minimum read-length
9.8 years ago by Thibault D. ▴ 700
2
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0
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11k
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Comment: C: de novo sequence assembly with extremely high coverage
9.8 years ago by Thibault D. ▴ 700
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0
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2.4k
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Answer: A: Finding the largest possible combination of mutations
9.8 years ago by Thibault D. ▴ 700
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1
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2.4k
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Comment: C: Finding the largest possible combination of mutations
9.8 years ago by Thibault D. ▴ 700
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1
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3.3k
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Answer: A: Differential expression analysis of transcriptome data
9.8 years ago by Thibault D. ▴ 700
4
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1
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2.8k
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Why does MMSeq advises against the use of Bowtie2 ?
RNA-Seq Bowtie2 MMSeq Bowtie alignment
updated 9.8 years ago by 105k • written 9.8 years ago by ▴ 700
2
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0
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2.9k
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Answer: A: Bowtie2 reporting alignments count
9.8 years ago by Thibault D. ▴ 700
0
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0
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9.5k
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Comment: C: How to find intron co-ordinates from the gff file?
9.9 years ago by Thibault D. ▴ 700
0
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0
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4.2k
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Comment: C: Normalization in RNA-seq
9.9 years ago by Thibault D. ▴ 700
0
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1
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11k
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Answer: A: How long time it typical takes to do a alignment on a human chromosome fastq fil
9.9 years ago by Thibault D. ▴ 700
0
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0
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15k
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Comment: C: Bowtie2 vs Tophat Whats the difference
10.0 years ago by Thibault D. ▴ 700
5
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2
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15k
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Answer: A: Bowtie2 vs Tophat Whats the difference
10.0 years ago by Thibault D. ▴ 700
5
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1
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8.3k
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Answer: Answer: Cuffmerge or Cuffcompare?!
updated 3.7 years ago by 45k • written 10.0 years ago by ▴ 700
0
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0
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2.4k
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Comment: C: Unstranded new transcript from Cuffmerge leads to error while RSEM prepares the
10.0 years ago by Thibault D. ▴ 700
1
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2
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2.4k
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Unstranded new transcript from Cuffmerge leads to error while RSEM prepares the reference
RNA-Seq RSEM Cuffmerge
updated 10.0 years ago by 105k • written 10.0 years ago by ▴ 700
0
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0
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9.8k
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Comment: C: use gff3 file with featureCount
10.1 years ago by Thibault D. ▴ 700
0
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0
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1.5k
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Comment: C: differentially expressed genes
10.2 years ago by Thibault D. ▴ 700
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