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1.8k
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Answer: A: How to select specific values (features and attributes) from gtf/gff file and co
7.0 years ago by kirannbishwa01 ★ 1.6k
1
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1
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1.1k
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Any opinions on the use of (or experience with) BWBBLE?
genome snp alignment sequence BWBBLE
7.0 years ago by kirannbishwa01 ★ 1.6k
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1
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2.1k
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Comment: C: How to update the fileds in bedfiles (or dataframes) based on overlaps from betw
7.0 years ago by kirannbishwa01 ★ 1.6k
2
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18
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2.1k
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How to update the fileds in bedfiles (or dataframes) based on overlaps from between intervals of two bedfiles (dataframes)?
bedtools merge python gene_features update
7.0 years ago by kirannbishwa01 ★ 1.6k
0
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1
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2.1k
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Comment: C: How to update the fileds in bedfiles (or dataframes) based on overlaps from betw
7.0 years ago by kirannbishwa01 ★ 1.6k
0
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0
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2.1k
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Comment: C: How to update the fileds in bedfiles (or dataframes) based on overlaps from betw
7.0 years ago by kirannbishwa01 ★ 1.6k
0
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1
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2.1k
views
Comment: C: How to update the fileds in bedfiles (or dataframes) based on overlaps from betw
7.0 years ago by kirannbishwa01 ★ 1.6k
0
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1
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2.1k
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Comment: C: How to update the fileds in bedfiles (or dataframes) based on overlaps from betw
7.0 years ago by kirannbishwa01 ★ 1.6k
0
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0
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2.1k
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Comment: C: How to update the fileds in bedfiles (or dataframes) based on overlaps from betw
7.0 years ago by kirannbishwa01 ★ 1.6k
0
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0
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2.1k
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Comment: C: How to update the fileds in bedfiles (or dataframes) based on overlaps from betw
7.0 years ago by kirannbishwa01 ★ 1.6k
0
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1
reply
2.1k
views
Comment: C: How to update the fileds in bedfiles (or dataframes) based on overlaps from betw
7.0 years ago by kirannbishwa01 ★ 1.6k
0
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1
reply
2.1k
views
Comment: C: How to update the fileds in bedfiles (or dataframes) based on overlaps from betw
7.0 years ago by kirannbishwa01 ★ 1.6k
0
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0
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2.1k
views
Comment: C: How to update the fileds in bedfiles (or dataframes) based on overlaps from betw
7.0 years ago by kirannbishwa01 ★ 1.6k
2
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0
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3.1k
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Answer: A: Which software can be used to extend the partially phased vcf from several diffe
7.1 years ago by kirannbishwa01 ★ 1.6k
2
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1
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3.1k
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Which software can be used to extend the partially phased vcf from several different individuals (samples) to get an extend length haplotype?
vcf SNP genome haplotype phasing genotype phasing
7.1 years ago by kirannbishwa01 ★ 1.6k
0
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0
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20k
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Comment: C: Plotting the coverage and depth (Y-axis) statistics of a bam file along the geno
7.1 years ago by kirannbishwa01 ★ 1.6k
3
votes
6
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3.4k
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How to call genotype bases for all the samples in a vcf using for-loop?
pyvcf vcf snps GT software error
7.1 years ago by kirannbishwa01 ★ 1.6k
0
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1
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3.4k
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Comment: C: How to call genotype bases for all the samples?
7.1 years ago by kirannbishwa01 ★ 1.6k
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0
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1.5k
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How to separate the haplotype in a hybrid given phase states in two different blocks?
python haplotype vcf phasing SNP
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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1
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1.6k
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How to remove paralogous alignment from RNAseq data?
RNA-Seq paralogous alignment SNP vcf alignment
updated 7.3 years ago by ★ 3.0k • written 7.3 years ago by ★ 1.6k
1
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0
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3.2k
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Answer: A: variant calling after mapping via bwa mem
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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1
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12k
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Comment: C: how to get the genotypes from vcf file.
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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1
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12k
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Comment: C: how to get the genotypes from vcf file.
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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0
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3.4k
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Answer: A: How to call genotype bases for all the samples?
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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0
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3.4k
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Comment: C: How to call the sample level genotype INFO when certain `FORMAT` fields (or attr
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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1
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3.4k
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Comment: C: How to call the sample level genotype INFO when certain `FORMAT` fields (or attr
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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1
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3.4k
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Comment: C: How to call the sample level genotype INFO when certain `FORMAT` fields (or attr
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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1
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3.4k
views
Comment: C: How to call the sample level genotype INFO when certain `FORMAT` fields (or attr
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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1
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3.4k
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Comment: C: How to call the sample level genotype INFO when certain `FORMAT` fields (or attr
7.3 years ago by kirannbishwa01 ★ 1.6k
3
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12
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3.4k
views
How to call the sample level genotype INFO when certain `FORMAT` fields (or attributes) are missing in some lines of the vcf file?
RNA-Seq software error vcf pyvcf SNP
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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2
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2.4k
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PyVCF is giving 'AttributeError' when extracting values from FORMAT and SAMPLE column.
RNA-Seq pyvcf vcf FORMAT GT
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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0
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2.4k
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Comment: C: PyVCF is giving 'AttributeError' when extracting values from FORMAT and SAMPLE c
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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1
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12k
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Comment: C: how to get the genotypes from vcf file.
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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0
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4.6k
views
Comment: C: How to extract FORMAT information (GT, PG, PI, etc) from each SAMPLE in a vcf fi
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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0
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4.6k
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Comment: C: How to extract FORMAT information (GT, PG, PI, etc) from each SAMPLE in a vcf fi
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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0
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4.6k
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Comment: C: How to extract FORMAT information (GT, PG, PI, etc) from each SAMPLE in a vcf fi
7.3 years ago by kirannbishwa01 ★ 1.6k
1
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9
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4.6k
views
How to extract FORMAT information (GT, PG, PI, etc) from each SAMPLE in a vcf file using pyvcf in python?
vcf python pyvcf FORMAT SAMPLE
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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1
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4.6k
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Comment: C: How to extract FORMAT information (GT, PG, PI, etc) from each SAMPLE in a vcf fi
7.3 years ago by kirannbishwa01 ★ 1.6k
0
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0
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3.6k
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Comment: C: Map of bioinformatics or who is bioinformatician.
7.4 years ago by kirannbishwa01 ★ 1.6k
0
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2
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103k
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Comment: C: How to plot coverage and depth statistics of a bam file
7.5 years ago by kirannbishwa01 ★ 1.6k
47
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2
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103k
views
Answer: A: How to plot coverage and depth statistics of a bam file
7.5 years ago by kirannbishwa01 ★ 1.6k
0
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0
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2.2k
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Comment: C: How to do context dependent data merge in python? help ?
7.5 years ago by kirannbishwa01 ★ 1.6k
0
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1
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2.2k
views
Comment: C: How to do context dependent data merge in python? help ?
7.5 years ago by kirannbishwa01 ★ 1.6k
0
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7
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2.2k
views
How to do context dependent data merge in python? help ?
python vcf data merge pandas data frame
7.5 years ago by kirannbishwa01 ★ 1.6k
0
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2
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2.2k
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Comment: C: How to do context dependent data merge in python?
7.5 years ago by kirannbishwa01 ★ 1.6k
0
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1
reply
2.2k
views
How to calculate reference allele frequency in pyvcf and print for all line?
pyvcf vcf python print
updated 7.6 years ago by 43k • written 7.6 years ago by ★ 1.6k
2
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0
replies
15k
views
Answer: A: How to select aligned reads below certain mapping Quality (from BWA)?
7.6 years ago by kirannbishwa01 ★ 1.6k
17
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8
replies
15k
views
How to select aligned reads below certain mapping Quality (from BWA)?
bwa bam mapping quality alignment samtools
7.6 years ago by kirannbishwa01 ★ 1.6k
0
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0
replies
15k
views
Comment: C: How to select aligned reads below certain mapping Quality (from BWA)?
7.6 years ago by kirannbishwa01 ★ 1.6k
3
votes
1
reply
2.6k
views
How to subtract a portion of a bam file from the large bam file of the same sample?
bam alignment samtools merge bedtools
updated 7.6 years ago by 8.7k • written 7.6 years ago by ★ 1.6k
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