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Comment: Comment: Single-end strand specific Rna-Seq: Which strand that the reads from.
4 weeks ago by mark.ziemann ★ 1.8k
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1
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299
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Comment: Comment: ClusterProfiler GeneRatio demoninator not the same for all values
4 weeks ago by mark.ziemann ★ 1.8k
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497
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Answer: Answer: Biological replicates in RNA-seq
4 months ago by mark.ziemann ★ 1.8k
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1
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297
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Answer: Answer: clusterprofile enrichment analysis
4 months ago by mark.ziemann ★ 1.8k
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0
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959
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Comment: Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
8 months ago by mark.ziemann ★ 1.8k
3
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1
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640
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Answer: Answer: What exactly are unmappable regions?
8 months ago by mark.ziemann ★ 1.8k
2
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1
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1.1k
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Answer: Answer: gseGO by fold-change returns errors
8 months ago by mark.ziemann ★ 1.8k
1
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1
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419
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Comment: Comment: How can I quantify degradation of DNA present in the sample after sequencing?
9 months ago by mark.ziemann ★ 1.8k
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556
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
9 months ago by mark.ziemann ★ 1.8k
4
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0
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911
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Answer: Answer: How to create a new gene signature from RNAseq data
14 months ago by mark.ziemann ★ 1.8k
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0
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450
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Comment: Comment: Finding the similarity between two arrays of sequences
14 months ago by mark.ziemann ★ 1.8k
1
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1
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478
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Answer: Answer: Horizontal Gene Tranfer/Recombination
14 months ago by mark.ziemann ★ 1.8k
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1.1k
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Comment: Comment: feature counts invalid parameter
14 months ago by mark.ziemann ★ 1.8k
3
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1
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490
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
14 months ago by mark.ziemann ★ 1.8k
2
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1
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639
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Comment: Comment: GSEA - Software or R
14 months ago by mark.ziemann ★ 1.8k
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1
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525
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Comment: Comment: blastn command line
14 months ago by mark.ziemann ★ 1.8k
1
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1
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579
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Answer: Answer: sequence error
14 months ago by mark.ziemann ★ 1.8k
2
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0
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862
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Answer: Answer: GC content calculation in percentage
14 months ago by mark.ziemann ★ 1.8k
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0
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437
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
14 months ago by mark.ziemann ★ 1.8k
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0
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1.2k
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Comment: Comment: How can I do an inner_join with multiple .csv files on the linux command line?
14 months ago by mark.ziemann ★ 1.8k
3
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2
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1.2k
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
14 months ago by mark.ziemann ★ 1.8k
1
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0
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556
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Comment: Comment: DNA sequencing from cord blood stem cells
14 months ago by mark.ziemann ★ 1.8k
1
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361
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Comment: Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
14 months ago by mark.ziemann ★ 1.8k
2
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1
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556
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Answer: Answer: DNA sequencing from cord blood stem cells
14 months ago by mark.ziemann ★ 1.8k
2
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0
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393
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Answer: Answer: Accessing particular gene set with msigdbr on R
14 months ago by mark.ziemann ★ 1.8k
4
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1
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507
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Answer: Answer: Repeats/Transposons finding
14 months ago by mark.ziemann ★ 1.8k
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1
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452
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Answer: Answer: How to get gene expression data from list of gene
14 months ago by mark.ziemann ★ 1.8k
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0
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563
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Comment: Comment: 3d plot in matplotlib of my own data
14 months ago by mark.ziemann ★ 1.8k
2
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0
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491
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Comment: Comment: Good statistics for RNA-seq alignments using RSEM
14 months ago by mark.ziemann ★ 1.8k
1
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0
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283
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Answer: Answer: Bacterial small-rna analysis
14 months ago by mark.ziemann ★ 1.8k
0
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0
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2.1k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
14 months ago by mark.ziemann ★ 1.8k
0
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0
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1.1k
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Comment: Comment: RepeatMasker error
14 months ago by mark.ziemann ★ 1.8k
0
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1
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2.1k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
14 months ago by mark.ziemann ★ 1.8k
2
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0
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441
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Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
14 months ago by mark.ziemann ★ 1.8k
1
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0
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370
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Answer: Answer: How to identify the genome build a dataset was aligned too?
14 months ago by mark.ziemann ★ 1.8k
0
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0
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676
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Comment: Comment: NGS reads calculation
14 months ago by mark.ziemann ★ 1.8k
1
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1
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1.1k
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Comment: Comment: RepeatMasker error
14 months ago by mark.ziemann ★ 1.8k
15
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11
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4.0k
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9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 4 months ago by 40k • written 18 months ago by ★ 1.8k
1
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0
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1.2k
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Comment: Comment: DMR calling for EWAS meta-analysis
21 months ago by mark.ziemann ★ 1.8k
0
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1
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888
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Comment: Comment: Excel functions to set anchor points onto a sequence to facilitate sequence bloc
2.2 years ago by mark.ziemann ★ 1.8k
1
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2
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1.2k
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DMR calling for EWAS meta-analysis
DNA methylation Epigenetics DMR calling
21 months ago by mark.ziemann ★ 1.8k
0
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0
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654
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Comment: C: Tool/Pipeline to get annotations from RNA-Seq
2.9 years ago by mark.ziemann ★ 1.8k
0
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0
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999
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Answer: A: Number of replicates in each group in RNA seq
3.0 years ago by mark.ziemann ★ 1.8k
1
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0
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733
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Answer: A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
3.0 years ago by mark.ziemann ★ 1.8k
1
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1
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1.4k
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Comment: C: Any reason for higher reported levels of non-CG methylation when analysing non-d
3.6 years ago by mark.ziemann ★ 1.8k
0
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0
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1.9k
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Comment: C: Best way to find all downloadable publicly available raw fastq files from SRA/GE
3.6 years ago by mark.ziemann ★ 1.8k
0
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0
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2.9k
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Comment: C: How to get 1 top hit only for each query in blastx
3.6 years ago by mark.ziemann ★ 1.8k
0
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1
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965
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Comment: C: Macs2 output shows only single basepair peak instead of a section of DNA
3.6 years ago by mark.ziemann ★ 1.8k
0
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0
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3.2k
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Comment: C: RNA seq with 2 biological replicates
3.6 years ago by mark.ziemann ★ 1.8k
0
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0
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1.2k
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Answer: A: Location of Genes on Chromosome
3.6 years ago by mark.ziemann ★ 1.8k
199 results • Page 1 of 4
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