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Comment:
Comment: Excel functions to set anchor points onto a sequence to facilitate sequence bloc
3.3 years ago by
mark.ziemann
★ 1.9k
1
vote
2
replies
1.5k
views
DMR calling for EWAS meta-analysis
DNA methylation
Epigenetics
DMR calling
2.8 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
796
views
Comment:
C: Tool/Pipeline to get annotations from RNA-Seq
3.9 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.2k
views
Answer:
A: Number of replicates in each group in RNA seq
4.0 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
920
views
Answer:
A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
4.0 years ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
1.7k
views
Comment:
C: Any reason for higher reported levels of non-CG methylation when analysing non-d
4.6 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.5k
views
Comment:
C: Best way to find all downloadable publicly available raw fastq files from SRA/GE
4.6 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
3.8k
views
Comment:
C: How to get 1 top hit only for each query in blastx
4.6 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.3k
views
Comment:
C: Macs2 output shows only single basepair peak instead of a section of DNA
4.6 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
4.4k
views
Comment:
C: RNA seq with 2 biological replicates
4.6 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.6k
views
Answer:
A: Location of Genes on Chromosome
4.7 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.1k
views
Comment:
C: find a correct gene symbol for lncRNA
4.7 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
6.2k
views
Answer:
A: /bin/bash/ command not found
4.7 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
6.2k
views
Comment:
C: /bin/bash/ command not found
4.7 years ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
4.4k
views
Answer:
A: RNA seq with 2 biological replicates
4.7 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
1.6k
views
Answer:
A: Safe to convert entrez gene id to ensembl gene id
4.7 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.5k
views
Answer:
A: How to decide the parameters and parameter values when running ChIP-seq Peak Cal
4.7 years ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
694
views
Answer:
A: Primer Design Validation
4.7 years ago by
mark.ziemann
★ 1.9k
6
votes
0
replies
26k
views
Answer:
A: BWA MEM Algorithm
updated 4.7 years ago by
Ram
44k • written 9.4 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
1.8k
views
Answer:
A: Software to count gene loss in batch
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
2.6k
views
Comment:
C: Cell Line gene expression Analysis with multiple replicates
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.7k
views
Comment:
C: Descrepancy with MACS model parameter for ChIP-Seq in tumor samples for Histone
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.4k
views
Comment:
C: Extract flanking regions from bam files based on coverage threshold
4.9 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
3.0k
views
Answer:
A: Is there an online resource with freely available transcriptomes data from?
4.9 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
819
views
Answer:
A: Is BWT algorithm suitable for all types of alignment task?
4.9 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.4k
views
Comment:
C: Extract flanking regions from bam files based on coverage threshold
4.9 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.1k
views
Comment:
C: Tactics for analysis of large number of highly similar diseased samples from RNA
updated 4.9 years ago by
Ram
44k • written 9.2 years ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
3.3k
views
Answer:
A: How to discover new mutations in a derived strain relative to a reference genome
updated 4.9 years ago by
Ram
44k • written 9.2 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
5.6k
views
Answer:
A: counting reads with featureCounts - uniquely assign reads to transcripts
updated 4.9 years ago by
Ram
44k • written 9.3 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
5.0k
views
Comment:
C: Problems with STAR mapping output
updated 4.9 years ago by
Ram
44k • written 9.3 years ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
2.7k
views
Answer:
Answer: Help simulating RRBS reads
updated 21 months ago by
Ram
44k • written 9.3 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
15k
views
Answer:
A: Extracting specific FASTA sequences from a complex FASTA file
updated 5.0 years ago by
Ram
44k • written 9.6 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.3k
views
Comment:
C: Detecting GC Bias in Transcriptomes (RNA-seq)
5.2 years ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
1.4k
views
Comment:
C: How to do the WGCNA in R
5.2 years ago by
mark.ziemann
★ 1.9k
5
votes
1
reply
4.9k
views
Answer:
A: fgsea tutorial issue with BiocParallel
5.7 years ago by
mark.ziemann
★ 1.9k
8
votes
1
reply
3.0k
views
Tool:
Digital Expression Explorer
RNA-Seq
GEO
updated 2.1 years ago by
Ram
44k • written 9.0 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.5k
views
Comment:
C: Choosing the best alignment or aligner
5.9 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
2.0k
views
Answer:
A: Meta-Analysis p-value combining and adjusting
6.1 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
2.2k
views
Comment:
C: Looking for publicly available dataset.
6.3 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.4k
views
Comment:
C: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
6.6 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.4k
views
Answer:
A: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
6.6 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
2.5k
views
Comment:
C: WGBS - Methylation state at CpG to peak calls
6.9 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
6.1k
views
Comment:
C: Cut-off for genesets in GSEA
6.9 years ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
3.4k
views
Answer:
A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
6.9 years ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
3.4k
views
Answer:
A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
6.9 years ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
2.5k
views
Comment:
C: WGBS - Methylation state at CpG to peak calls
6.9 years ago by
mark.ziemann
★ 1.9k
3
votes
0
replies
2.2k
views
Answer:
A: Looking for publicly available dataset.
6.9 years ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
6.1k
views
Comment:
C: Cut-off for genesets in GSEA
6.9 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.2k
views
Comment:
C: Download ENCODE Project BED files using REST API
7.2 years ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
2.2k
views
Answer:
A: Download ENCODE Project BED files using REST API
7.2 years ago by
mark.ziemann
★ 1.9k
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