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Comment: Comment: Single-end strand specific Rna-Seq: Which strand that the reads from.
29 days ago by mark.ziemann ★ 1.8k
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1
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294
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Comment: Comment: ClusterProfiler GeneRatio demoninator not the same for all values
29 days ago by mark.ziemann ★ 1.8k
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0
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958
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Comment: Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
8 months ago by mark.ziemann ★ 1.8k
1
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1
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419
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Comment: Comment: How can I quantify degradation of DNA present in the sample after sequencing?
9 months ago by mark.ziemann ★ 1.8k
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0
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449
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Comment: Comment: Finding the similarity between two arrays of sequences
14 months ago by mark.ziemann ★ 1.8k
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0
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1.1k
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Comment: Comment: feature counts invalid parameter
14 months ago by mark.ziemann ★ 1.8k
2
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1
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638
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Comment: Comment: GSEA - Software or R
14 months ago by mark.ziemann ★ 1.8k
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1
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525
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Comment: Comment: blastn command line
14 months ago by mark.ziemann ★ 1.8k
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1.2k
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Comment: Comment: How can I do an inner_join with multiple .csv files on the linux command line?
14 months ago by mark.ziemann ★ 1.8k
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553
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Comment: Comment: DNA sequencing from cord blood stem cells
14 months ago by mark.ziemann ★ 1.8k
1
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0
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360
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Comment: Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
14 months ago by mark.ziemann ★ 1.8k
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0
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561
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Comment: Comment: 3d plot in matplotlib of my own data
14 months ago by mark.ziemann ★ 1.8k
2
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489
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Comment: Comment: Good statistics for RNA-seq alignments using RSEM
14 months ago by mark.ziemann ★ 1.8k
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0
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2.1k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
14 months ago by mark.ziemann ★ 1.8k
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0
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1.1k
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Comment: Comment: RepeatMasker error
14 months ago by mark.ziemann ★ 1.8k
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1
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2.1k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
14 months ago by mark.ziemann ★ 1.8k
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0
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674
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Comment: Comment: NGS reads calculation
14 months ago by mark.ziemann ★ 1.8k
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1
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1.1k
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Comment: Comment: RepeatMasker error
14 months ago by mark.ziemann ★ 1.8k
1
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0
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1.2k
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Comment: Comment: DMR calling for EWAS meta-analysis
21 months ago by mark.ziemann ★ 1.8k
0
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1
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887
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Comment: Comment: Excel functions to set anchor points onto a sequence to facilitate sequence bloc
2.2 years ago by mark.ziemann ★ 1.8k
0
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0
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651
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Comment: C: Tool/Pipeline to get annotations from RNA-Seq
2.9 years ago by mark.ziemann ★ 1.8k
1
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1
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1.4k
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Comment: C: Any reason for higher reported levels of non-CG methylation when analysing non-d
3.6 years ago by mark.ziemann ★ 1.8k
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0
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1.9k
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Comment: C: Best way to find all downloadable publicly available raw fastq files from SRA/GE
3.6 years ago by mark.ziemann ★ 1.8k
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0
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2.9k
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Comment: C: How to get 1 top hit only for each query in blastx
3.6 years ago by mark.ziemann ★ 1.8k
0
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1
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963
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Comment: C: Macs2 output shows only single basepair peak instead of a section of DNA
3.6 years ago by mark.ziemann ★ 1.8k
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0
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3.2k
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Comment: C: RNA seq with 2 biological replicates
3.6 years ago by mark.ziemann ★ 1.8k
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1
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828
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Comment: C: find a correct gene symbol for lncRNA
3.6 years ago by mark.ziemann ★ 1.8k
0
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0
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5.1k
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Comment: C: /bin/bash/ command not found
3.6 years ago by mark.ziemann ★ 1.8k
0
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1
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2.4k
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Comment: C: Cell Line gene expression Analysis with multiple replicates
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 1.8k
0
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0
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2.5k
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Comment: C: Descrepancy with MACS model parameter for ChIP-Seq in tumor samples for Histone
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 1.8k
0
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1
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1.1k
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Comment: C: Extract flanking regions from bam files based on coverage threshold
3.9 years ago by mark.ziemann ★ 1.8k
0
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1
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1.1k
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Comment: C: Extract flanking regions from bam files based on coverage threshold
3.9 years ago by mark.ziemann ★ 1.8k
0
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0
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2.0k
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Comment: C: Tactics for analysis of large number of highly similar diseased samples from RNA
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 1.8k
0
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1
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4.6k
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Comment: C: Problems with STAR mapping output
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 1.8k
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0
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1.1k
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Comment: C: Detecting GC Bias in Transcriptomes (RNA-seq)
4.2 years ago by mark.ziemann ★ 1.8k
2
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0
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1.1k
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Comment: C: How to do the WGCNA in R
4.2 years ago by mark.ziemann ★ 1.8k
0
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0
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1.2k
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Comment: C: Choosing the best alignment or aligner
4.9 years ago by mark.ziemann ★ 1.8k
1
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0
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1.8k
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Comment: C: Looking for publicly available dataset.
5.3 years ago by mark.ziemann ★ 1.8k
0
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0
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1.2k
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Comment: C: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
5.6 years ago by mark.ziemann ★ 1.8k
0
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1
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2.1k
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Comment: C: WGBS - Methylation state at CpG to peak calls
5.9 years ago by mark.ziemann ★ 1.8k
0
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0
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5.2k
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Comment: C: Cut-off for genesets in GSEA
5.9 years ago by mark.ziemann ★ 1.8k
1
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1
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2.1k
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Comment: C: WGBS - Methylation state at CpG to peak calls
5.9 years ago by mark.ziemann ★ 1.8k
2
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1
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5.2k
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Comment: C: Cut-off for genesets in GSEA
5.9 years ago by mark.ziemann ★ 1.8k
0
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0
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1.8k
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Comment: C: Download ENCODE Project BED files using REST API
6.2 years ago by mark.ziemann ★ 1.8k
0
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1
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1.5k
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Comment: C: Recommended program for evaluating aligner sensitivity
6.2 years ago by mark.ziemann ★ 1.8k
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0
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1.4k
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Comment: C: Workflow to store and integrate multiple NGS datasets for easy access and analys
6.2 years ago by mark.ziemann ★ 1.8k
0
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0
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2.0k
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Comment: C: How good are bwa-mem and stampy when dealing with low quality reads?
6.4 years ago by mark.ziemann ★ 1.8k
0
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1
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1.7k
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Comment: C: Chloroplast genome: Need to close 2 gaps (~2Kbp), any suggestions?
6.4 years ago by mark.ziemann ★ 1.8k
0
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0
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1.3k
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Comment: C: Filtering DMRs
6.4 years ago by mark.ziemann ★ 1.8k
0
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1
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3.7k
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Comment: C: DESeq without replicate nbinomTest method
7.1 years ago by mark.ziemann ★ 1.8k
92 results • Page 1 of 2
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