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Comment:
Comment: transcriptomic data for molecular subtyping
10 weeks ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
403
views
Answer:
Answer: How to find GO function from GEO2R results
10 weeks ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
345
views
Answer:
Answer: transcriptomic data for molecular subtyping
10 weeks ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
221
views
Answer:
Answer: Aneuploidy analysis from WGS
10 weeks ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
459
views
Comment:
Comment: Simulation of gene level methylation data
10 weeks ago by
mark.ziemann
★ 1.9k
1
vote
2
replies
656
views
Answer:
Answer: Geo2R troubleshooting
12 weeks ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
459
views
Answer:
Answer: Simulation of gene level methylation data
12 weeks ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
555
views
Answer:
Answer: Methods to analyze EM-seq data
3 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
476
views
Comment:
Comment: Error in mitch reports in R
3 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
435
views
Answer:
Answer: mitch analysis report priority by standard deviation
3 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
258
views
Answer:
Answer: How to get differntial Protein expression from protein abundance?
3 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
502
views
Comment:
Comment: Single-end strand specific Rna-Seq: Which strand that the reads from.
8 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
617
views
Comment:
Comment: ClusterProfiler GeneRatio demoninator not the same for all values
8 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
708
views
Answer:
Answer: Biological replicates in RNA-seq
11 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
482
views
Answer:
Answer: clusterprofile enrichment analysis
11 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
15 months ago by
mark.ziemann
★ 1.9k
3
votes
1
reply
886
views
Answer:
Answer: What exactly are unmappable regions?
15 months ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
1.7k
views
Answer:
Answer: gseGO by fold-change returns errors
16 months ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
573
views
Comment:
Comment: How can I quantify degradation of DNA present in the sample after sequencing?
16 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
739
views
Answer:
Answer: Combining multiple datasets increases the fgsea p-value
16 months ago by
mark.ziemann
★ 1.9k
4
votes
0
replies
1.3k
views
Answer:
Answer: How to create a new gene signature from RNAseq data
21 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
572
views
Comment:
Comment: Finding the similarity between two arrays of sequences
21 months ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
623
views
Answer:
Answer: Horizontal Gene Tranfer/Recombination
21 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: feature counts invalid parameter
21 months ago by
mark.ziemann
★ 1.9k
3
votes
1
reply
612
views
Answer:
Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
21 months ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
838
views
Comment:
Comment: GSEA - Software or R
21 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
686
views
Comment:
Comment: blastn command line
21 months ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
732
views
Answer:
Answer: sequence error
21 months ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
1.2k
views
Answer:
Answer: GC content calculation in percentage
21 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
564
views
Answer:
Answer: Pathway Enrichment Analysis according to tumor mutation burden.
21 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.5k
views
Comment:
Comment: How can I do an inner_join with multiple .csv files on the linux command line?
21 months ago by
mark.ziemann
★ 1.9k
3
votes
2
replies
1.5k
views
Answer:
Answer: How can I do an inner_join with multiple .csv files on the linux command line?
21 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
730
views
Comment:
Comment: DNA sequencing from cord blood stem cells
21 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
517
views
Comment:
Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
21 months ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
730
views
Answer:
Answer: DNA sequencing from cord blood stem cells
21 months ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
593
views
Answer:
Answer: Accessing particular gene set with msigdbr on R
21 months ago by
mark.ziemann
★ 1.9k
4
votes
1
reply
723
views
Answer:
Answer: Repeats/Transposons finding
21 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
581
views
Answer:
Answer: How to get gene expression data from list of gene
21 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
894
views
Comment:
Comment: 3d plot in matplotlib of my own data
22 months ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
649
views
Comment:
Comment: Good statistics for RNA-seq alignments using RSEM
22 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
392
views
Answer:
Answer: Bacterial small-rna analysis
22 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.8k
views
Comment:
Comment: mapping reads using kallisto - rna seq analysis
22 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.5k
views
Comment:
Comment: RepeatMasker error
22 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
2.8k
views
Comment:
Comment: mapping reads using kallisto - rna seq analysis
22 months ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
571
views
Answer:
Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
22 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
480
views
Answer:
Answer: How to identify the genome build a dataset was aligned too?
22 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
863
views
Comment:
Comment: NGS reads calculation
22 months ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
1.5k
views
Comment:
Comment: RepeatMasker error
22 months ago by
mark.ziemann
★ 1.9k
15
votes
11
replies
4.7k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 11 months ago by
Ram
43k • written 2.1 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
1.4k
views
Comment:
Comment: DMR calling for EWAS meta-analysis
2.4 years ago by
mark.ziemann
★ 1.9k
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