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comments
1
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434
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Comment:
Comment: transcriptomic data for molecular subtyping
5 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
597
views
Comment:
Comment: Simulation of gene level methylation data
5 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
546
views
Comment:
Comment: Error in mitch reports in R
6 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
576
views
Comment:
Comment: Single-end strand specific Rna-Seq: Which strand that the reads from.
11 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
765
views
Comment:
Comment: ClusterProfiler GeneRatio demoninator not the same for all values
11 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.5k
views
Comment:
Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
18 months ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
648
views
Comment:
Comment: How can I quantify degradation of DNA present in the sample after sequencing?
19 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
657
views
Comment:
Comment: Finding the similarity between two arrays of sequences
2.0 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: feature counts invalid parameter
2.0 years ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
926
views
Comment:
Comment: GSEA - Software or R
2.0 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
754
views
Comment:
Comment: blastn command line
2.0 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.6k
views
Comment:
Comment: How can I do an inner_join with multiple .csv files on the linux command line?
2.0 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
823
views
Comment:
Comment: DNA sequencing from cord blood stem cells
2.0 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
573
views
Comment:
Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
2.0 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.0k
views
Comment:
Comment: 3d plot in matplotlib of my own data
2.0 years ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
732
views
Comment:
Comment: Good statistics for RNA-seq alignments using RSEM
2.0 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
3.0k
views
Comment:
Comment: mapping reads using kallisto - rna seq analysis
2.0 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.6k
views
Comment:
Comment: RepeatMasker error
2.0 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
3.0k
views
Comment:
Comment: mapping reads using kallisto - rna seq analysis
2.0 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
941
views
Comment:
Comment: NGS reads calculation
2.0 years ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
1.6k
views
Comment:
Comment: RepeatMasker error
2.0 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
1.5k
views
Comment:
Comment: DMR calling for EWAS meta-analysis
2.6 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.2k
views
Comment:
Comment: Excel functions to set anchor points onto a sequence to facilitate sequence bloc
3.1 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
772
views
Comment:
C: Tool/Pipeline to get annotations from RNA-Seq
3.7 years ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
1.7k
views
Comment:
C: Any reason for higher reported levels of non-CG methylation when analysing non-d
4.4 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.4k
views
Comment:
C: Best way to find all downloadable publicly available raw fastq files from SRA/GE
4.4 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
3.7k
views
Comment:
C: How to get 1 top hit only for each query in blastx
4.4 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.2k
views
Comment:
C: Macs2 output shows only single basepair peak instead of a section of DNA
4.4 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
4.2k
views
Comment:
C: RNA seq with 2 biological replicates
4.4 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.0k
views
Comment:
C: find a correct gene symbol for lncRNA
4.5 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
6.1k
views
Comment:
C: /bin/bash/ command not found
4.5 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
2.6k
views
Comment:
C: Cell Line gene expression Analysis with multiple replicates
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.7k
views
Comment:
C: Descrepancy with MACS model parameter for ChIP-Seq in tumor samples for Histone
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.3k
views
Comment:
C: Extract flanking regions from bam files based on coverage threshold
4.7 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.3k
views
Comment:
C: Extract flanking regions from bam files based on coverage threshold
4.7 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.1k
views
Comment:
C: Tactics for analysis of large number of highly similar diseased samples from RNA
updated 4.7 years ago by
Ram
44k • written 9.0 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
5.0k
views
Comment:
C: Problems with STAR mapping output
updated 4.7 years ago by
Ram
44k • written 9.1 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.3k
views
Comment:
C: Detecting GC Bias in Transcriptomes (RNA-seq)
5.0 years ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
1.3k
views
Comment:
C: How to do the WGCNA in R
5.0 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.4k
views
Comment:
C: Choosing the best alignment or aligner
5.7 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
2.2k
views
Comment:
C: Looking for publicly available dataset.
6.1 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.4k
views
Comment:
C: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
6.4 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
2.4k
views
Comment:
C: WGBS - Methylation state at CpG to peak calls
6.7 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
5.9k
views
Comment:
C: Cut-off for genesets in GSEA
6.7 years ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
2.4k
views
Comment:
C: WGBS - Methylation state at CpG to peak calls
6.7 years ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
5.9k
views
Comment:
C: Cut-off for genesets in GSEA
6.7 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.1k
views
Comment:
C: Download ENCODE Project BED files using REST API
7.0 years ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
1.7k
views
Comment:
C: Recommended program for evaluating aligner sensitivity
7.1 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.6k
views
Comment:
C: Workflow to store and integrate multiple NGS datasets for easy access and analys
7.1 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.3k
views
Comment:
C: How good are bwa-mem and stampy when dealing with low quality reads?
7.2 years ago by
mark.ziemann
★ 1.9k
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