Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
4.7k
views
Comment: C: Troubleshooting low quality mapping
8.8 years ago by scchess ▴ 640
0
votes
1
reply
8.0k
views
Comment: C: Develop an R package for CRAN vs BioConductor
8.8 years ago by scchess ▴ 640
11
votes
2
replies
8.0k
views
Answer: A: Develop an R package for CRAN vs BioConductor
8.8 years ago by scchess ▴ 640
0
votes
0
replies
8.0k
views
Comment: C: Develop an R package for CRAN vs BioConductor
8.8 years ago by scchess ▴ 640
1
vote
0
replies
19k
views
Comment: C: Retrieve The Reads And Fastq From Bam File
8.9 years ago by scchess ▴ 640
0
votes
1
reply
3.9k
views
Comment: C: Bug in JellyFish and DSK k-mer counting tool?
8.9 years ago by scchess ▴ 640
0
votes
0
replies
3.9k
views
Comment: C: Bug in JellyFish and DSK k-mer counting tool?
8.9 years ago by scchess ▴ 640
9
votes
6
replies
3.9k
views
Bug in JellyFish and DSK k-mer counting tool?
dsk jellyfish k-mer
8.9 years ago by scchess ▴ 640
2
votes
1
reply
41k
views
Comment: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
9.1 years ago by scchess ▴ 640
0
votes
1
reply
19k
views
Comment: C: Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
9.2 years ago by scchess ▴ 640
3
votes
1
reply
41k
views
Comment: C: How To Get Mapping Statistics On Bam File
9.2 years ago by scchess ▴ 640
3
votes
3
replies
5.6k
views
How to subsample reads for a chromosome in a BAM file with samtools?
samtools BAM
updated 9.3 years ago by 105k • written 9.3 years ago by ▴ 640
1
vote
0
replies
2.7k
views
Comment: A: what is R shiny application is used for and how to load it in a webpage ?
9.3 years ago by scchess ▴ 640
0
votes
1
reply
3.8k
views
Comment: C: How to count number of unique exons/introns (and their locations) in a GTF file?
9.3 years ago by scchess ▴ 640
0
votes
0
replies
3.8k
views
Comment: C: How to count number of unique exons/introns (and their locations) in a GTF file?
9.3 years ago by scchess ▴ 640
1
vote
5
replies
3.8k
views
How to count number of unique exons/introns (and their locations) in a GTF file?
gtf exons
9.3 years ago by scchess ▴ 640
0
votes
0
replies
130k
views
Comment: C: How To Split A Bam File By Chromosome
9.3 years ago by scchess ▴ 640
1
vote
0
replies
25k
views
Comment: C: Bed File With Introns Only
9.4 years ago by scchess ▴ 640
0
votes
1
reply
2.2k
views
Comment: C: Can we do a statistical test of a region against the genome?
9.7 years ago by scchess ▴ 640
0
votes
0
replies
2.2k
views
Comment: C: Can we do a statistical test of a region against the genome?
9.7 years ago by scchess ▴ 640
0
votes
4
replies
2.2k
views
Can we do a statistical test of a region against the genome?
dna genome
9.7 years ago by scchess ▴ 640
6
votes
6
replies
5.8k
views
What's the precise definition for sensitivity and specificity for alignment?
genome sequence bwa alignment
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 640
0
votes
1
reply
5.8k
views
Comment: C: What's the precise definition for sensitivity and specificity for alignment?
9.7 years ago by scchess ▴ 640
0
votes
0
replies
4.9k
views
Comment: C: Raw read count on Cuffdiff
9.8 years ago by scchess ▴ 640
8
votes
4
replies
3.7k
views
C++ parse GTF file
gtf
updated 9.9 years ago by ▴ 20 • written 9.9 years ago by ▴ 640
0
votes
1
reply
4.5k
views
Comment: C: Beginner question: box-plot and PCA in RNA-seq
10.0 years ago by scchess ▴ 640
2
votes
3
replies
4.5k
views
Beginner question: box-plot and PCA in RNA-seq
RNA-Seq
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 640
0
votes
0
replies
8.6k
views
Answer: A: Raw Counts From Cufflinks Output
10.0 years ago by scchess ▴ 640
0
votes
0
replies
18k
views
Comment: C: How to generate BedGraph from BedTools Coverage?
10.0 years ago by scchess ▴ 640
2
votes
1
reply
1.8k
views
Analysis of genomic data - background reading?
dna genome biostatistics
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 640
0
votes
0
replies
43k
views
Comment: C: Plotting Density Of Snps On Chromosomes
10.1 years ago by scchess ▴ 640
0
votes
0
replies
6.6k
views
Comment: C: Why is DESeq a better method for finding highly upregulated and downregulated ge
10.1 years ago by scchess ▴ 640
0
votes
0
replies
18k
views
Comment: C: How to generate BedGraph from BedTools Coverage?
10.1 years ago by scchess ▴ 640
12
votes
10
replies
18k
views
How to generate BedGraph from BedTools Coverage?
genomic bed bedtools
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 640
0
votes
1
reply
18k
views
Comment: C: How to generate BedGraph from BedTools Coverage?
10.1 years ago by scchess ▴ 640
3
votes
0
replies
120k
views
Comment: C: How to plot coverage and depth statistics of a bam file
10.1 years ago by scchess ▴ 640
1
vote
0
replies
15k
views
Answer: A: Tophat2 : Error: Segment-Based Junction Search Failed With Err =-11
10.1 years ago by scchess ▴ 640
0
votes
0
replies
8.4k
views
Comment: C: bedtools genomecov .genome file usage
10.2 years ago by scchess ▴ 640
0
votes
0
replies
269k
views
Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 640
6
votes
0
replies
269k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
10.2 years ago by scchess ▴ 640
0
votes
0
replies
46k
views
Comment: Comment: Why Does Rna-Seq Read Count Fit Poisson Distribution?
updated 3.9 years ago by 45k • written 10.2 years ago by ▴ 640
0
votes
0
replies
6.9k
views
Answer: Answer: Error when counting reads in genes with summarizeOverlaps (Genomic-Alignments pa
updated 3.7 years ago by 45k • written 10.2 years ago by ▴ 640
0
votes
1
reply
4.8k
views
Comment: C: Support vector machine in bioinformatics.
10.3 years ago by scchess ▴ 640
1
vote
0
replies
4.8k
views
Comment: C: Support vector machine in bioinformatics.
10.3 years ago by scchess ▴ 640
0
votes
1
reply
16k
views
Comment: C: DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
10.3 years ago by scchess ▴ 640
0
votes
1
reply
4.7k
views
Comment: Comment: Mathematical question: Correlate ln transformed traits with log2 transformed exp
updated 2.9 years ago by 45k • written 10.3 years ago by ▴ 640
0
votes
0
replies
2.6k
views
Comment: C: How cuffcompare calculates sensitivity and specificity?
10.4 years ago by scchess ▴ 640
2
votes
1
reply
2.6k
views
Answer: Answer: How cuffcompare calculates sensitivity and specificity?
updated 3.3 years ago by 45k • written 10.4 years ago by ▴ 640
0
votes
1
reply
2.1k
views
How to reuse DESeq2 inputs for EdgeR
deseq2 edgeR
updated 3.0 years ago by 45k • written 10.4 years ago by ▴ 640
2
votes
6
replies
8.7k
views
How to calculate overall coverage in de novo metagenomics assembly?
metagenomics velvet
updated 2.8 years ago by 45k • written 10.4 years ago by ▴ 640
125 results • Page 2 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6