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Comment: C: Develop an R package for CRAN vs BioConductor
7.3 years ago by scchess ▴ 640
11
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2
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5.5k
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Answer: A: Develop an R package for CRAN vs BioConductor
7.3 years ago by scchess ▴ 640
0
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0
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5.5k
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Comment: C: Develop an R package for CRAN vs BioConductor
7.3 years ago by scchess ▴ 640
1
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0
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16k
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Comment: C: Retrieve The Reads And Fastq From Bam File
7.4 years ago by scchess ▴ 640
0
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1
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3.1k
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Comment: C: Bug in JellyFish and DSK k-mer counting tool?
7.4 years ago by scchess ▴ 640
0
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0
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3.1k
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Comment: C: Bug in JellyFish and DSK k-mer counting tool?
7.4 years ago by scchess ▴ 640
9
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6
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3.1k
views
Bug in JellyFish and DSK k-mer counting tool?
dsk jellyfish k-mer
7.4 years ago by scchess ▴ 640
2
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1
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36k
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Comment: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
7.6 years ago by scchess ▴ 640
0
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1
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17k
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Comment: C: Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
7.7 years ago by scchess ▴ 640
3
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1
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38k
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Comment: C: How To Get Mapping Statistics On Bam File
7.7 years ago by scchess ▴ 640
3
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3
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4.8k
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How to subsample reads for a chromosome in a BAM file with samtools?
samtools BAM
updated 7.8 years ago by 104k • written 7.8 years ago by ▴ 640
1
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0
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2.1k
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Comment: A: what is R shiny application is used for and how to load it in a webpage ?
7.8 years ago by scchess ▴ 640
0
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1
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3.1k
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Comment: C: How to count number of unique exons/introns (and their locations) in a GTF file?
7.8 years ago by scchess ▴ 640
0
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0
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3.1k
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Comment: C: How to count number of unique exons/introns (and their locations) in a GTF file?
7.8 years ago by scchess ▴ 640
1
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5
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3.1k
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How to count number of unique exons/introns (and their locations) in a GTF file?
gtf exons
7.8 years ago by scchess ▴ 640
0
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0
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113k
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Comment: C: How To Split A Bam File By Chromosome
7.8 years ago by scchess ▴ 640
1
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0
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23k
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Comment: C: Bed File With Introns Only
7.9 years ago by scchess ▴ 640
0
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1
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1.7k
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Comment: C: Can we do a statistical test of a region against the genome?
8.2 years ago by scchess ▴ 640
0
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0
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1.7k
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Comment: C: Can we do a statistical test of a region against the genome?
8.2 years ago by scchess ▴ 640
0
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4
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1.7k
views
Can we do a statistical test of a region against the genome?
dna genome
8.2 years ago by scchess ▴ 640
6
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6
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5.0k
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What's the precise definition for sensitivity and specificity for alignment?
genome sequence bwa alignment
updated 21 months ago by 43k • written 8.2 years ago by ▴ 640
0
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1
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5.0k
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Comment: C: What's the precise definition for sensitivity and specificity for alignment?
8.2 years ago by scchess ▴ 640
0
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0
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4.2k
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Comment: C: Raw read count on Cuffdiff
8.3 years ago by scchess ▴ 640
8
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4
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3.0k
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C++ parse GTF file
gtf
updated 8.4 years ago by ▴ 20 • written 8.4 years ago by ▴ 640
0
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1
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3.9k
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Comment: C: Beginner question: box-plot and PCA in RNA-seq
8.4 years ago by scchess ▴ 640
2
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3
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3.9k
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Beginner question: box-plot and PCA in RNA-seq
RNA-Seq
updated 20 months ago by 43k • written 8.4 years ago by ▴ 640
0
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0
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8.1k
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Answer: A: Raw Counts From Cufflinks Output
8.4 years ago by scchess ▴ 640
0
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0
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16k
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Comment: C: How to generate BedGraph from BedTools Coverage?
8.5 years ago by scchess ▴ 640
2
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1
reply
1.5k
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Analysis of genomic data - background reading?
dna genome biostatistics
updated 20 months ago by 43k • written 8.5 years ago by ▴ 640
0
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0
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40k
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Comment: C: Plotting Density Of Snps On Chromosomes
8.5 years ago by scchess ▴ 640
0
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0
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4.8k
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Comment: C: Why is DESeq a better method for finding highly upregulated and downregulated ge
8.5 years ago by scchess ▴ 640
0
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0
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16k
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Comment: C: How to generate BedGraph from BedTools Coverage?
8.5 years ago by scchess ▴ 640
12
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10
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16k
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How to generate BedGraph from BedTools Coverage?
genomic bed bedtools
updated 20 months ago by 43k • written 8.6 years ago by ▴ 640
0
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1
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16k
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Comment: C: How to generate BedGraph from BedTools Coverage?
8.6 years ago by scchess ▴ 640
3
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0
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103k
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Comment: C: How to plot coverage and depth statistics of a bam file
8.6 years ago by scchess ▴ 640
1
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0
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14k
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Answer: A: Tophat2 : Error: Segment-Based Junction Search Failed With Err =-11
8.6 years ago by scchess ▴ 640
0
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0
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7.5k
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Comment: C: bedtools genomecov .genome file usage
8.7 years ago by scchess ▴ 640
0
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0
replies
239k
views
Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
updated 19 months ago by 43k • written 8.7 years ago by ▴ 640
6
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0
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239k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
8.7 years ago by scchess ▴ 640
0
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0
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40k
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Comment: Comment: Why Does Rna-Seq Read Count Fit Poisson Distribution?
updated 2.3 years ago by 43k • written 8.7 years ago by ▴ 640
0
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0
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6.3k
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Answer: Answer: Error when counting reads in genes with summarizeOverlaps (Genomic-Alignments pa
updated 2.2 years ago by 43k • written 8.7 years ago by ▴ 640
0
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1
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3.5k
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Comment: C: Support vector machine in bioinformatics.
8.8 years ago by scchess ▴ 640
1
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0
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3.5k
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Comment: C: Support vector machine in bioinformatics.
8.8 years ago by scchess ▴ 640
0
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1
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12k
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Comment: C: DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
8.8 years ago by scchess ▴ 640
0
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1
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3.2k
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Comment: Comment: Mathematical question: Correlate ln transformed traits with log2 transformed exp
updated 16 months ago by 43k • written 8.8 years ago by ▴ 640
0
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0
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2.2k
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Comment: C: How cuffcompare calculates sensitivity and specificity?
8.8 years ago by scchess ▴ 640
2
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1
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2.2k
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Answer: Answer: How cuffcompare calculates sensitivity and specificity?
updated 22 months ago by 43k • written 8.8 years ago by ▴ 640
0
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1
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1.7k
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How to reuse DESeq2 inputs for EdgeR
deseq2 edgeR
updated 17 months ago by 43k • written 8.9 years ago by ▴ 640
2
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6
replies
7.2k
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How to calculate overall coverage in de novo metagenomics assembly?
metagenomics velvet
updated 15 months ago by 43k • written 8.9 years ago by ▴ 640
0
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0
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2.8k
views
Comment: Comment: Deseq - Should I Include Only The Samples Being Compared?
updated 15 months ago by 43k • written 8.9 years ago by ▴ 640
124 results • Page 2 of 3
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