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Comment: Comment: UMI-tools deduplication of reads with UMI at the start of the line
2.7 years ago by i.sudbery 22k
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Answer: Answer: UMI-tools deduplication of reads with UMI at the start of the line
2.7 years ago by i.sudbery 22k
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1
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2.2k
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Comment: Comment: Removing umi split off as a separate fastq (RNA-seq)
2.7 years ago by i.sudbery 22k
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Answer: Answer: Removing umi split off as a separate fastq (RNA-seq)
2.7 years ago by i.sudbery 22k
1
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1
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3.1k
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
2.8 years ago by i.sudbery 22k
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Comment: Comment: How to extract aligned reads that contain splice junctions from STAR
2.8 years ago by i.sudbery 22k
2
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2.2k
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Comment: Comment: parallel for 10000 whole exome data
2.8 years ago by i.sudbery 22k
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902
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Answer: Answer: How to perform comparison between two differentially expressed data
2.8 years ago by i.sudbery 22k
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1.6k
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Answer: Answer: Non-adjusted p-value used in publication
2.8 years ago by i.sudbery 22k
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5.6k
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Answer: Answer: How to decide when to have local hardware vs cloud computing?
2.8 years ago by i.sudbery 22k
2
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1
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783
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Answer: Answer: how to deal with strong sample heterogenous effects in RNAseq
updated 2.8 years ago by 45k • written 2.8 years ago by 22k
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Answer: Answer: Can I use GTEx RNA-seq gene read data compare the gene expression difference bet
2.8 years ago by i.sudbery 22k
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4
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Which conservation score to use to measure conservation of splice sites?
compartive-genomics conservation
updated 2.8 years ago by 45k • written 6.3 years ago by 22k
2
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0
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3.5k
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Answer: Answer: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
2.8 years ago by i.sudbery 22k
5
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985
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Answer: Answer: Which one do you recommend for the problem with the smaller number of normal sam
2.9 years ago by i.sudbery 22k
0
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1
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1.4k
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Comment: Comment: Evaluating RNASeq counts distribution
2.9 years ago by i.sudbery 22k
2
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3.5k
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Comment: Comment: GTF files from Ensembl Releases 105 and 106 unsorted
updated 2.9 years ago by 154k • written 2.9 years ago by 22k
2
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1
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1.4k
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Answer: Answer: Evaluating RNASeq counts distribution
2.9 years ago by i.sudbery 22k
1
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1
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2.9k
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Comment: Comment: Are package downgrades a necessary evil in Conda?
2.9 years ago by i.sudbery 22k
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1
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2.9k
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Comment: Comment: Are package downgrades a necessary evil in Conda?
2.9 years ago by i.sudbery 22k
2
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1
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1.6k
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Answer: Answer: What does PCA results signify?
2.9 years ago by i.sudbery 22k
4
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2
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2.9k
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Answer: Answer: Are package downgrades a necessary evil in Conda?
2.9 years ago by i.sudbery 22k
4
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2
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4.2k
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Answer: Answer: UMI deduplication and output
2.9 years ago by i.sudbery 22k
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0
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1.4k
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Comment: Comment: Esembl geneID with Characters
2.9 years ago by i.sudbery 22k
1
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1
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4.2k
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Comment: Comment: How to extract unmapped mate for specific reads using pysam or other module in p
2.9 years ago by i.sudbery 22k
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0
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17k
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Comment: Comment: Laptops for bioinformatics
2.9 years ago by i.sudbery 22k
2
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1
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17k
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Comment: Comment: Laptops for bioinformatics
2.9 years ago by i.sudbery 22k
2
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1
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17k
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Answer: Answer: Laptops for bioinformatics
2.9 years ago by i.sudbery 22k
0
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1
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4.2k
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Comment: Comment: How to extract unmapped mate for specific reads using pysam or other module in p
2.9 years ago by i.sudbery 22k
1
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1
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1.0k
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Answer: Answer: Bulk RNA-seq, seeing strong differences between groups at a timepoint post-infec
2.9 years ago by i.sudbery 22k
1
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0
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1.3k
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Answer: Answer: GO ontology- no biological processes found
2.9 years ago by i.sudbery 22k
1
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1
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4.2k
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Answer: Answer: How to extract unmapped mate for specific reads using pysam or other module in p
2.9 years ago by i.sudbery 22k
0
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1
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2.4k
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Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.9 years ago by i.sudbery 22k
1
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0
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1.1k
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Answer: Answer: Expression level of mutant genes in RNAseq data
2.9 years ago by i.sudbery 22k
0
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0
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5.0k
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Comment: Comment: The Duplicates Dilemma of ChIP-Seq
2.9 years ago by i.sudbery 22k
1
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1
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2.4k
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Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.9 years ago by i.sudbery 22k
1
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1
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5.0k
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Comment: Comment: The Duplicates Dilemma of ChIP-Seq
2.9 years ago by i.sudbery 22k
1
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1
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5.0k
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Comment: Comment: The Duplicates Dilemma of ChIP-Seq
2.9 years ago by i.sudbery 22k
1
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0
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2.4k
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Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.9 years ago by i.sudbery 22k
2
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0
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1.5k
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Answer: Answer: How to calculate/ extract co-ordinates of TSS and TTS from gtf file in excel ?
2.9 years ago by i.sudbery 22k
1
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0
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1.5k
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Comment: Comment: How to calculate/ extract co-ordinates of TSS and TTS from gtf file in excel ?
2.9 years ago by i.sudbery 22k
2
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1
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1.1k
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Answer: Answer: How do I create input files required by iGEAK (or find alternatives to iGEAK) fo
2.9 years ago by i.sudbery 22k
1
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1
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3.0k
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Comment: Comment: Multi factor analysis in DESeq2 and design formula
2.9 years ago by i.sudbery 22k
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0
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3.0k
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Comment: Comment: Multi factor analysis in DESeq2 and design formula
2.9 years ago by i.sudbery 22k
1
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1
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3.0k
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Comment: Comment: Multi factor analysis in DESeq2 and design formula
2.9 years ago by i.sudbery 22k
5
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4.0k
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Answer: Answer: Should I merge my technical replicates for bulk RNA seq?
2.9 years ago by i.sudbery 22k
0
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0
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2.7k
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Comment: Comment: Multiple Testing Correction for GO Terms
3.0 years ago by i.sudbery 22k
1
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0
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1.4k
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Answer: Answer: How to iterate through paired-end reads in pysam?
3.0 years ago by i.sudbery 22k
1
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1
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2.6k
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Comment: Comment: How to pair TCGA bam files with no properly paired reads?
3.0 years ago by i.sudbery 22k
1
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1
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2.6k
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Comment: Comment: How to pair TCGA bam files with no properly paired reads?
3.0 years ago by i.sudbery 22k
1,719 results • Page 10 of 35
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