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4
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2.8k
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Rename Tag in BAM file
bam
updated 11 months ago by 166k • written 6.0 years ago by 22k
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Comment: C: db-GaP / GTEx analysis on the cloud. Easiest way?
6.0 years ago by i.sudbery 22k
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2
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2.9k
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Answer: A: db-GaP / GTEx analysis on the cloud. Easiest way?
6.0 years ago by i.sudbery 22k
1
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2.4k
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Comment: C: Effect of gene size on WGCNA
6.0 years ago by i.sudbery 22k
3
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1.4k
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Answer: A: is there any database that show RNA false positive?
6.0 years ago by i.sudbery 22k
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3.0k
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Comment: C: What aligners to choose between Hisat2 and BWA for chip-SEQ analysis
6.0 years ago by i.sudbery 22k
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3.2k
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Answer: A: relevance of GSEA on Nanostring ncounter gene expression data ?
6.0 years ago by i.sudbery 22k
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2.4k
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Comment: C: Effect of gene size on WGCNA
6.0 years ago by i.sudbery 22k
2
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2
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2.4k
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Answer: A: Effect of gene size on WGCNA
6.0 years ago by i.sudbery 22k
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8.2k
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Comment: C: Difference in R1 and R2 FASTQ files from RNA seq paired end
6.0 years ago by i.sudbery 22k
3
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1
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6.5k
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Answer: A: From DESeq2 normalized counts to heatmap in R
6.1 years ago by i.sudbery 22k
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1.3k
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Answer: A: how to compare statistics differences for APA
6.1 years ago by i.sudbery 22k
5
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1
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7.1k
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Answer: A: tool to analysis bulk RNAseq data with UMIs
6.1 years ago by i.sudbery 22k
1
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0
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7.1k
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Comment: C: tool to analysis bulk RNAseq data with UMIs
6.1 years ago by i.sudbery 22k
1
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0
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4.3k
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Comment: C: Interprete gene body coverage plot
6.1 years ago by i.sudbery 22k
3
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2.1k
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Answer: A: Current standards for batch correction and gene expression correction?
6.1 years ago by i.sudbery 22k
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1
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2.1k
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Comment: C: Current standards for batch correction and gene expression correction?
6.1 years ago by i.sudbery 22k
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2.2k
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Comment: C: Queries regarding RNASeq sequencing
6.1 years ago by i.sudbery 22k
1
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2
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2.2k
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Comment: C: Queries regarding RNASeq sequencing
6.1 years ago by i.sudbery 22k
1
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1
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2.2k
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Comment: C: Queries regarding RNASeq sequencing
6.1 years ago by i.sudbery 22k
0
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2.1k
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Answer: A: deep learning predict gene expression
6.1 years ago by i.sudbery 22k
1
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1.5k
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Comment: C: How to download miRNA and Gene Expression Tables from TCGA and other sites where
6.1 years ago by i.sudbery 22k
3
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1
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2.5k
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Answer: A: How to calculate TIN score of the GSE dataset to perform some post quality check
6.1 years ago by i.sudbery 22k
4
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1
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12k
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Answer: C: Execute commands in Bash Chunk in Rmarkdown
6.1 years ago by i.sudbery 22k
4
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0
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1.3k
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Forum: Help make UMI-tools even better - take our survey
Survey UMI UMI-Tools
updated 2.5 years ago by 45k • written 6.1 years ago by 22k
9
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2
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3.3k
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Answer: A: Has anyone here worked with CNCI before? EXHAUSTED
6.1 years ago by i.sudbery 22k
0
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1
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2.8k
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Comment: C: DESeq2 Error: Error: $ operator is invalid for atomic vectors
6.1 years ago by i.sudbery 22k
0
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0
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2.8k
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Comment: C: Remove overlap between Exon and UTR boundaries
6.1 years ago by i.sudbery 22k
5
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1
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2.3k
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Answer: A: Question about Isoform expression (miRNA) data from TCGA
6.1 years ago by i.sudbery 22k
0
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1
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1.6k
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Comment: C: Find most upregulated genes in one library?
6.1 years ago by i.sudbery 22k
1
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0
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1.3k
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Comment: C: Calculate p-values and corresponding FDR for all genes in the dataset
6.1 years ago by i.sudbery 22k
2
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1
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12k
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Comment: C: Execute commands in Bash Chunk in Rmarkdown
6.1 years ago by i.sudbery 22k
4
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0
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2.8k
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Comment: C: Remove overlap between Exon and UTR boundaries
6.1 years ago by i.sudbery 22k
2
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0
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8.2k
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Comment: C: Millions of Reads Needed for Differential Gene Expression
6.1 years ago by i.sudbery 22k
3
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0
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8.2k
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Comment: C: Millions of Reads Needed for Differential Gene Expression
6.1 years ago by i.sudbery 22k
1
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0
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5.3k
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Comment: C: Differential gene expression from 1 replicate using RPKM and edgeR
6.1 years ago by i.sudbery 22k
2
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1
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12k
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Comment: C: Execute commands in Bash Chunk in Rmarkdown
6.1 years ago by i.sudbery 22k
1
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2
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1.6k
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Comment: C: Do we have Alt Aware peak calling tools also?
6.1 years ago by i.sudbery 22k
1
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1
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5.3k
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Comment: C: Differential gene expression from 1 replicate using RPKM and edgeR
6.1 years ago by i.sudbery 22k
0
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2
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5.3k
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Comment: C: Differential gene expression from 1 replicate using RPKM and edgeR
6.2 years ago by i.sudbery 22k
4
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1
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5.3k
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Answer: A: Differential gene expression from 1 replicate using RPKM and edgeR
6.2 years ago by i.sudbery 22k
2
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0
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3.5k
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Answer: A: hg19 exon, intron, UTR region
6.2 years ago by i.sudbery 22k
1
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1
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3.3k
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Comment: C: Question about miRNA nomenclature
6.2 years ago by i.sudbery 22k
9
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1
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3.3k
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Answer: Answer: Question about miRNA nomenclature
3.8 years ago by i.sudbery 22k
8
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0
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8.4k
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Answer: A: Replicates for RNA-seq from 1 cell line undergoing different treatments
6.2 years ago by i.sudbery 22k
56
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1
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43k
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Answer: A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
6.2 years ago by i.sudbery 22k
2
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1
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2.5k
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Comment: C: Merging two files based on a particular column
6.2 years ago by i.sudbery 22k
4
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1
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2.5k
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Answer: A: Merging two files based on a particular column
6.2 years ago by i.sudbery 22k
1
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0
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3.2k
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Comment: C: Bowtie2 Error: *.* has more quality values than read characters
6.2 years ago by i.sudbery 22k
0
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1
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1.2k
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Comment: C: SNPs associated to a disease in the African popultion
6.2 years ago by i.sudbery 22k
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