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Answer: A: How can I save the output from samtools and awk as a bam file?
7.6 years ago by i.sudbery 22k
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3.7k
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Comment: C: How to separate protein-coding and non-coding in gtf file
7.6 years ago by i.sudbery 22k
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Answer: C: Normalization and differential analysis in ATAC-seq data
7.6 years ago by i.sudbery 22k
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25k
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Comment: C: should I merge fastq files for different lanes before do QC?
7.6 years ago by i.sudbery 22k
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2.3k
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Comment: C: C Albicans Genome Count Matrix Total Genes
7.7 years ago by i.sudbery 22k
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7.6k
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Comment: C: HISAT index incomplete even with HUGE RAM
7.8 years ago by i.sudbery 22k
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7.6k
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Comment: C: HISAT index incomplete even with HUGE RAM
7.8 years ago by i.sudbery 22k
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1.6k
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Job: Mixed wet/dry Postdoctoral Reserach Assoicate - University of Sheffield
cancer RNA miRNA splicing
updated 2.5 years ago by 45k • written 7.8 years ago by 22k
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13k
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Comment: C: Analyzing RNA-seq without replicates
7.8 years ago by i.sudbery 22k
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13k
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Answer: A: Analyzing RNA-seq without replicates
7.8 years ago by i.sudbery 22k
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Comment: C: Is it appropriate to assume genes of similar expression level also have similar
7.8 years ago by i.sudbery 22k
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9.2k
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Comment: C: Is it appropriate to assume genes of similar expression level also have similar
7.8 years ago by i.sudbery 22k
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9.2k
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Comment: C: Is it appropriate to assume genes of similar expression level also have similar
7.8 years ago by i.sudbery 22k
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1
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9.2k
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Comment: C: Is it appropriate to assume genes of similar expression level also have similar
7.8 years ago by i.sudbery 22k
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1.1k
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Comment: C: What is the number of reads would you recommend to analyze lncRNAs without loss
7.9 years ago by i.sudbery 22k
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9.2k
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Answer: A: Is it appropriate to assume genes of similar expression level also have similar
7.9 years ago by i.sudbery 22k
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2.3k
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Answer: A: Using hypergeometric distribution to determine significance of gene overlap in R
7.9 years ago by i.sudbery 22k
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2.8k
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Comment: C: Correct for confounding variable (variability in knockdown efficiency) in paired
7.9 years ago by i.sudbery 22k
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2.3k
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Comment: C: Using hypergeometric distribution to determine significance of gene overlap in R
7.9 years ago by i.sudbery 22k
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1
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8.4k
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Comment: C: Replicates for RNA-seq from 1 cell line undergoing different treatments
7.9 years ago by i.sudbery 22k
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1
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8.4k
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Comment: C: Replicates for RNA-seq from 1 cell line undergoing different treatments
7.9 years ago by i.sudbery 22k
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Answer: A: stringtie and alternative splicing
7.9 years ago by i.sudbery 22k
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6.7k
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Comment: C: Computer specs for Bioinformatics
7.9 years ago by i.sudbery 22k
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3.0k
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Comment: C: Existing software to calculate RNASeq read distribution by "gene_type" (Gencode)
8.0 years ago by i.sudbery 22k
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50k
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Comment: C: In simple words - what is k-mer??
8.0 years ago by i.sudbery 22k
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50k
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Answer: A: In simple words - what is k-mer??
8.0 years ago by i.sudbery 22k
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3.1k
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Comment: C: Completely confused about terminology and what I'm actually analysing here
8.0 years ago by i.sudbery 22k
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1
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3.1k
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Answer: A: Completely confused about terminology and what I'm actually analysing here
8.0 years ago by i.sudbery 22k
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3.9k
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Comment: C: Experience with dbGaP controlled access from outside the US?
8.0 years ago by i.sudbery 22k
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3.9k
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Comment: C: Experience with dbGaP controlled access from outside the US?
8.0 years ago by i.sudbery 22k
3
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3.9k
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Answer: A: Experience with dbGaP controlled access from outside the US?
8.0 years ago by i.sudbery 22k
2
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19k
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Comment: C: Filtering out low expressed genes in RNA-Seq data
8.1 years ago by i.sudbery 22k
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5.0k
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Comment: C: Uniquely mapped in Human
8.1 years ago by i.sudbery 22k
4
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1
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19k
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Answer: A: Filtering out low expressed genes in RNA-Seq data
8.2 years ago by i.sudbery 22k
1
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1
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5.0k
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Comment: C: Uniquely mapped in Human
8.2 years ago by i.sudbery 22k
18
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25k
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Answer: A: should I merge fastq files for different lanes before do QC?
8.2 years ago by i.sudbery 22k
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13k
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Comment: C: Download SAM/BAM files from SRA takes ages!!!
8.2 years ago by i.sudbery 22k
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2.4k
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Comment: C: RNASeq data normalisation affected by genes with large number of read counts
8.2 years ago by i.sudbery 22k
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2
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2.4k
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Answer: A: RNASeq data normalisation affected by genes with large number of read counts
8.2 years ago by i.sudbery 22k
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3.1k
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Comment: C: Recommended Tools For 3'UTR APA Detection From Rna-Seq Data?
8.2 years ago by i.sudbery 22k
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2
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3.1k
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Answer: A: Recommended Tools For 3'UTR APA Detection From Rna-Seq Data?
8.3 years ago by i.sudbery 22k
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0
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12k
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Answer: A: Tools for demultiplexing a large fastq file based on random in-line barcodes
8.3 years ago by i.sudbery 22k
12
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5.6k
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Tool: UMI-Tools 0.5, now with tools for cell barcoded scRNA-seq
UMI RNA-Seq single-cell
updated 2.4 years ago by 45k • written 8.3 years ago by 22k
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13k
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Comment: C: Download SAM/BAM files from SRA takes ages!!!
8.3 years ago by i.sudbery 22k
1
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2
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13k
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Comment: C: Download SAM/BAM files from SRA takes ages!!!
8.3 years ago by i.sudbery 22k
2
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1
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13k
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Comment: C: Download SAM/BAM files from SRA takes ages!!!
8.3 years ago by i.sudbery 22k
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4.5k
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Comment: C: Pysam changes bam format when printing
8.4 years ago by i.sudbery 22k
4
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1
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4.5k
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Answer: A: Pysam changes bam format when printing
8.4 years ago by i.sudbery 22k
1
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0
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1.7k
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Job: PhD: Exciting wet/dry synthetic biology PhD opportunity with industrial links at the University of Sheffield
PhD
updated 2.5 years ago by 45k • written 8.5 years ago by 22k
2
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8.5k
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Comment: C: Is annotation of enhancers to nearest gene pointless?
8.5 years ago by i.sudbery 22k
1,728 results • Page 32 of 35
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