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Answer: Answer: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
updated 21 months ago by 45k • written 21 months ago by 22k
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
21 months ago by i.sudbery 22k
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1.7k
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Comment: Comment: Differential expression analysis in a short gene list
21 months ago by i.sudbery 22k
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1.4k
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Comment: Comment: Question about identification of DEGs in paired sample using edgeR
21 months ago by i.sudbery 22k
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1.7k
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Answer: Answer: Differential expression analysis in a short gene list
21 months ago by i.sudbery 22k
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1.4k
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Answer: Answer: Question about identification of DEGs in paired sample using edgeR
21 months ago by i.sudbery 22k
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Comment: Comment: First experiences matter
21 months ago by i.sudbery 22k
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2.3k
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Comment: Comment: How to get enhancer regions
21 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Log2 transformation is well used, but is there a good paper that can be used as
21 months ago by i.sudbery 22k
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1.7k
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Comment: Comment: How to define the density (or something else) of B in the sequence, considering
21 months ago by i.sudbery 22k
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1.3k
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Comment: Comment: Doublechecking enrichment of promoters of DE genes
21 months ago by i.sudbery 22k
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2.0k
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Comment: Comment: installing DESeq2 on Windows
updated 21 months ago by 45k • written 21 months ago by 22k
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1.4k
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Answer: Answer: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
updated 21 months ago by 45k • written 21 months ago by 22k
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Answer: Answer: installing DESeq2 on Windows
21 months ago by i.sudbery 22k
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7.3k
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Comment: Comment: What apps can read large FASTQ files on Windows?
21 months ago by i.sudbery 22k
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7.3k
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Answer: Answer: What apps can read large FASTQ files on Windows?
22 months ago by i.sudbery 22k
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1.3k
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Answer: Answer: Best method for batch correction of three datasets
updated 22 months ago by 89k • written 22 months ago by 22k
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2.2k
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Comment: Comment: p-value combination methods
22 months ago by i.sudbery 22k
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2.2k
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Comment: Comment: p-value combination methods
22 months ago by i.sudbery 22k
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842
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Answer: Answer: multiple condition and time course in RNA-seq
22 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Downstream analysis with DEseq2 normalization
22 months ago by i.sudbery 22k
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1.4k
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Answer: Answer: Does DESeq2 correct for library size when importing the counts with DESeqDataSet
22 months ago by i.sudbery 22k
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2.0k
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Comment: Comment: Command line or python RNA-seq read simulator
23 months ago by i.sudbery 22k
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2.0k
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Comment: Comment: Command line or python RNA-seq read simulator
23 months ago by i.sudbery 22k
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2.0k
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Comment: Comment: Command line or python RNA-seq read simulator
23 months ago by i.sudbery 22k
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1
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2.8k
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Comment: Comment: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
23 months ago by i.sudbery 22k
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2
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2.0k
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Comment: Comment: Command line or python RNA-seq read simulator
23 months ago by i.sudbery 22k
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9
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2.0k
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Command line or python RNA-seq read simulator
simulation RNA-seq
23 months ago by i.sudbery 22k
3
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1
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2.8k
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Answer: Answer: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
23 months ago by i.sudbery 22k
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1
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2.8k
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Comment: Comment: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
23 months ago by i.sudbery 22k
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1.1k
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Comment: Comment: Cross validate RNA-seq and ATAC-seq
23 months ago by i.sudbery 22k
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1.4k
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Comment: Comment: Why my GWAS p-value QQ-plot is far above diagonal
24 months ago by i.sudbery 22k
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4
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2.6k
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Answer: Answer: Dealing with transcriptome sequences that are smaller than their respective gene
2.0 years ago by i.sudbery 22k
3
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3.2k
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Answer: Answer: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
2.0 years ago by i.sudbery 22k
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1
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1.1k
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Comment: Comment: What is "intersectional genetic strategy"? How does it work? What can it do?
2.0 years ago by i.sudbery 22k
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1
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1.7k
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Answer: Answer: From where can I obtain vcf files of healthy exomes
2.1 years ago by i.sudbery 22k
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3.0k
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Answer: Answer: Is Bioinformatics a Professional Degree?
2.1 years ago by i.sudbery 22k
4
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1
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2.1k
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Answer: Answer: Can one sample t.test be used to determine statistical significance for log2FC v
2.1 years ago by i.sudbery 22k
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2.7k
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Comment: Comment: Formatting RNA-Seq Data for Kruskal Wallis Test on R
2.1 years ago by i.sudbery 22k
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1.8k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
2.1 years ago by i.sudbery 22k
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1
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1.8k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
2.1 years ago by i.sudbery 22k
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1
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1.8k
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Answer: Answer: Understaning the result of Meta-analysis of differential expression across datas
2.1 years ago by i.sudbery 22k
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1
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1.8k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
2.1 years ago by i.sudbery 22k
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1
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1.8k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
2.1 years ago by i.sudbery 22k
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2.1k
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Answer: Answer: RSEM uses different gene lengths for each sample.
2.2 years ago by i.sudbery 22k
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4.2k
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Comment: Comment: UMI deduplication and output
2.2 years ago by i.sudbery 22k
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1.7k
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Comment: Comment: Should we assume UMI-based scRNAseq data is not compositional?
2.2 years ago by i.sudbery 22k
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1.7k
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Comment: Comment: Should we assume UMI-based scRNAseq data is not compositional?
2.2 years ago by i.sudbery 22k
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2.7k
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Comment: Comment: Umi dedup with fastp
2.2 years ago by i.sudbery 22k
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1.4k
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Answer: Answer: Quantification of allele-specific gene expression in RNA-seq
2.2 years ago by i.sudbery 22k
1,719 results • Page 7 of 35
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