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2.6k
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Answer: A: Cuffdiff results transcript testing
10.1 years ago by manekineko ▴ 150
0
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9
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3.0k
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Tophat mapping less reads (and less properly paired) when more real -r is specified?
tophat RNA-Seq
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
0
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1
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3.0k
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Comment: C: Tophat mapping less reads (and less properly paired) when more real -r is specif
10.1 years ago by manekineko ▴ 150
0
votes
1
reply
3.0k
views
Comment: C: Tophat mapping less reads (and less properly paired) when more real -r is specif
10.1 years ago by manekineko ▴ 150
0
votes
0
replies
3.0k
views
Comment: C: Tophat mapping less reads (and less properly paired) when more real -r is specif
10.1 years ago by manekineko ▴ 150
0
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1
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5.6k
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Comment: C: Mean insert size and Mean inner distance between mate pairs
10.1 years ago by manekineko ▴ 150
3
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3
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5.6k
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Mean insert size and Mean inner distance between mate pairs
RNA-Seq
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
0
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0
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2.9k
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Comment: Comment: Check is RNA-seq mapping (tophat) is performed ok (hg38)?
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
2
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5
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2.9k
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Check is RNA-seq mapping (tophat) is performed ok (hg38)?
tophat RNA-Seq
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
0
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1
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2.9k
views
Comment: Comment: Check is RNA-seq mapping (tophat) is performed ok (hg38)?
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
6
votes
6
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5.2k
views
Very short reads (20-22) , bowtie and tophat not doing gapped alignment
RNA-Seq
updated 2.9 years ago by 45k • written 10.2 years ago by ▴ 150
1
vote
5
replies
5.6k
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Problems with STAR mapping output
RNA-Seq STAR
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
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7.0k
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Comment: C: multiple paired-end files for one sample?
10.2 years ago by manekineko ▴ 150
0
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1
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7.0k
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Comment: C: multiple paired-end files for one sample?
10.2 years ago by manekineko ▴ 150
2
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6
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7.0k
views
multiple paired-end files for one sample?
RNA-Seq
updated 2.9 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
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5.1k
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Comment: C: htseq-count not working with miRbase gff?
10.2 years ago by manekineko ▴ 150
0
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1
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5.1k
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Comment: A: htseq-count not working with miRbase gff?
10.2 years ago by manekineko ▴ 150
0
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1
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5.1k
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Comment: Comment: htseq-count not working with miRbase gff?
updated 2.9 years ago by 45k • written 10.2 years ago by ▴ 150
0
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2
replies
1.9k
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miRNAs differential expression with no replicates
mirna
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
0
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4
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5.2k
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Deseq web-based (with GUI)
RNA-Seq
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
3
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4
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4.0k
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bowtie options for exact match with reference short sequence
bowtie exact option
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
0
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0
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4.0k
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Comment: C: bowtie options for exact match with reference short sequence
10.2 years ago by manekineko ▴ 150
1
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0
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32k
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Comment: Comment: Merge Paired-End Reads
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
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10k
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Comment: Comment: Mirna-Seq Trimming And Mapping?
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
0
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6
replies
8.1k
views
Removing barcode and adapters?
sequencing adapters
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
reply
8.1k
views
Comment: C: Removing barcode and adapters?
10.2 years ago by manekineko ▴ 150
0
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1
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8.1k
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Answer: A: Removing barcode and adapters?
10.2 years ago by manekineko ▴ 150
2
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4
replies
2.8k
views
htseq-count counts all reads as no_feature
htseq-count
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
0
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0
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2.8k
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Comment: Comment: htseq-count counts all reads as no_feature
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
reply
1.5k
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Comment: C: Way to check if there is local trimmed alihned reads BOWTIE2
10.2 years ago by manekineko ▴ 150
2
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4
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1.5k
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Way to check if there is local trimmed alihned reads BOWTIE2
bowtie2
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
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5.2k
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Comment: C: Very short reads (20-22) , bowtie and tophat not doing gapped alignment
10.2 years ago by manekineko ▴ 150
0
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0
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4.3k
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Comment: C: low % of read map to mirase mature miRNAs
10.2 years ago by manekineko ▴ 150
0
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0
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4.3k
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Comment: C: low % of read map to mirase mature miRNAs
10.2 years ago by manekineko ▴ 150
0
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1
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2.8k
views
Comment: Comment: htseq-count counts all reads as no_feature
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
reply
2.2k
views
GFF model in Tophat and/or Cufflinks?
RNA-Seq
updated 10.2 years ago by ★ 2.2k • written 10.2 years ago by ▴ 150
0
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0
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3.0k
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Answer: A: GFF problem - gtf_to_fasta (Tophat) outputs only 2 sequences from 70 entries in
10.2 years ago by manekineko ▴ 150
0
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1
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7.6k
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Comment: C: Extending ends of sequences with the help of reads?
10.2 years ago by manekineko ▴ 150
0
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0
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7.6k
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Comment: Comment: Extending ends of sequences with the help of reads?
updated 2.7 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
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7.6k
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Comment: Comment: Extending ends of sequences with the help of reads?
updated 2.7 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
reply
2.8k
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Comment: Comment: Tool to retrieve regions with reads?
updated 2.7 years ago by 45k • written 10.2 years ago by ▴ 150
0
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0
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4.4k
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Comment: C: Count number of mapped raw reads for each transcript in SAM file
10.2 years ago by manekineko ▴ 150
7
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10
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4.4k
views
Count number of mapped raw reads for each transcript in SAM file
RNA-Seq
updated 2.7 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
reply
4.4k
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Comment: C: Count number of mapped raw reads for each transcript in SAM file
10.2 years ago by manekineko ▴ 150
0
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0
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2.8k
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Comment: C: Tool to retrieve regions with reads?
10.3 years ago by manekineko ▴ 150
4
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12
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2.8k
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Tool to retrieve regions with reads?
RNA-Seq
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 150
0
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0
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2.8k
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Comment: Comment: Tool to retrieve regions with reads?
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 150
0
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0
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2.8k
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Comment: A: Tool to retrieve regions with reads?
10.3 years ago by manekineko ▴ 150
2
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1
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2.0k
views
smallRNA-seq, but have files R1/R1fastq?
fastq smallRNAs single-end
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 150
99 results • Page 2 of 2
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