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GFF problem - gtf_to_fasta (Tophat) outputs only 2 sequences from 70 entries in GFF?
tophat RNA-Seq GFF GTF
updated 5.1 years ago by 20 • written 10.2 years ago by ▴ 150
0
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1
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1.6k
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Comment: C: pathway or network from DEG list tool (plant)
5.1 years ago by manekineko ▴ 150
0
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1
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1.6k
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Comment: C: pathway or network from DEG list tool (plant)
5.1 years ago by manekineko ▴ 150
0
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5
replies
1.6k
views
pathway or network from DEG list tool (plant)
DEG network pathway
updated 5.1 years ago by ★ 1.3k • written 5.1 years ago by ▴ 150
10
votes
12
replies
9.5k
views
8 follow
Qiime file for Krona pie chart?
qiime krona
updated 5.6 years ago by ▴ 20 • written 9.3 years ago by ▴ 150
0
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0
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2.1k
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Comment: C: Collapsing BAM based on seq and positions
5.6 years ago by manekineko ▴ 150
0
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1
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2.1k
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Comment: C: Collapsing BAM based on seq and positions
5.6 years ago by manekineko ▴ 150
0
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1
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2.1k
views
Comment: A: Collapsing BAM based on seq and positions
5.6 years ago by manekineko ▴ 150
2
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8
replies
2.1k
views
Collapsing BAM based on seq and positions
bam collapse
5.6 years ago by manekineko ▴ 150
0
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2
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9.2k
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Comment: A: Do you need a deduplication tool for FASTQ data in fastp?
5.7 years ago by manekineko ▴ 150
0
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1
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5.6k
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Comment: C: Problems with STAR mapping output
updated 5.9 years ago by 45k • written 10.2 years ago by ▴ 150
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0
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5.1k
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Comment: C: htseq-count not working with miRbase gff?
updated 5.9 years ago by 45k • written 10.2 years ago by ▴ 150
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0
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1.9k
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Comment: C: miRNAs differential expression with no replicates
updated 5.9 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
reply
10k
views
Comment: C: Mirna-Seq Trimming And Mapping?
updated 5.9 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
reply
10k
views
Comment: C: Mirna-Seq Trimming And Mapping?
updated 5.9 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
reply
10k
views
Comment: C: Mirna-Seq Trimming And Mapping?
updated 5.9 years ago by 45k • written 10.2 years ago by ▴ 150
0
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1
reply
10k
views
Answer: A: Mirna-Seq Trimming And Mapping?
updated 5.9 years ago by 45k • written 10.2 years ago by ▴ 150
18
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14
replies
7.6k
views
8 follow
Extending ends of sequences with the help of reads?
Assembly
updated 2.7 years ago by 45k • written 10.2 years ago by ▴ 150
0
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0
replies
1.2k
views
qiime open vs closed picking with SILVA?
qiime silva
6.1 years ago by manekineko ▴ 150
0
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0
replies
2.4k
views
Comment: C: Early Stage Researcher (with PhD option) - Bioinformatics (Marie-Curie Actions H
7.2 years ago by manekineko ▴ 150
1
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1
reply
2.4k
views
Job: Early Stage Researcher (with PhD option) - Bioinformatics (Marie-Curie Actions H2020)
MSc marie-curie PhD
updated 2.3 years ago by 45k • written 7.2 years ago by ▴ 150
0
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1
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3.1k
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RDP classifier pipeline question (16s analysis)
16s
updated 7.6 years ago by ★ 2.2k • written 8.6 years ago by ▴ 150
2
votes
7
replies
3.2k
views
LoFreq outputing no SNP?
LoFreq
updated 7.6 years ago by 20 • written 7.8 years ago by ▴ 150
0
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1
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3.2k
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Comment: C: LoFreq outputing no SNP?
7.8 years ago by manekineko ▴ 150
0
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0
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3.2k
views
Comment: C: LoFreq outputing no SNP?
7.8 years ago by manekineko ▴ 150
0
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1
reply
3.2k
views
Comment: C: LoFreq outputing no SNP?
7.8 years ago by manekineko ▴ 150
0
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1
reply
1.5k
views
Comment: C: Help downloading pepper genome (I have bad speed connection)
7.8 years ago by manekineko ▴ 150
2
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3
replies
1.5k
views
Help downloading pepper genome (I have bad speed connection)
pepper capsicum genome
7.8 years ago by manekineko ▴ 150
0
votes
1
reply
1.7k
views
16s analysis MySeq PE - analysis of only forward reads?
16s metagenomics
updated 7.8 years ago by 10k • written 7.8 years ago by ▴ 150
0
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0
replies
2.6k
views
Comment: C: Uncollapsing FASTA file
7.9 years ago by manekineko ▴ 150
1
vote
9
replies
2.6k
views
Uncollapsing FASTA file
uncollapsing
updated 7.9 years ago by 21k • written 7.9 years ago by ▴ 150
0
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0
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2.6k
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Comment: C: Uncollapsing FASTA file
7.9 years ago by manekineko ▴ 150
0
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2
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2.6k
views
Comment: C: Uncollapsing FASTA file
7.9 years ago by manekineko ▴ 150
3
votes
7
replies
3.6k
views
Very slow Bio-linux on VirtualBox?
bio-linux virtualbox ova
updated 9.2 years ago by ★ 4.0k • written 9.3 years ago by ▴ 150
2
votes
1
reply
1.9k
views
Statistics and visualization software (STAMP similar) for general purposes?
stamp statistics visualization
updated 9.2 years ago by 20 • written 9.3 years ago by ▴ 150
0
votes
1
reply
3.2k
views
Edit BIOM file - delete samples, rearrange samples?
biom
updated 9.3 years ago by ▴ 730 • written 9.3 years ago by ▴ 150
0
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0
replies
3.6k
views
Comment: C: Very slow Bio-linux on VirtualBox?
9.3 years ago by manekineko ▴ 150
0
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1
reply
3.5k
views
Comment: C: 16s amplicon metagenomics - no mapping file?
9.3 years ago by manekineko ▴ 150
1
vote
3
replies
3.5k
views
16s amplicon metagenomics - no mapping file?
mothur qiime
updated 9.4 years ago by ▴ 870 • written 9.4 years ago by ▴ 150
5
votes
9
replies
5.1k
views
htseq-count not working with miRbase gff?
htseq-count mirbase gff
updated 2.9 years ago by 45k • written 10.2 years ago by ▴ 150
0
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0
replies
3.4k
views
Comment: Comment: Suggestions for small tools to add to Galaxy
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
6
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4
replies
3.1k
views
Statistical question (Deseq, Cuffdis) when one condition is zero?
differential expression statistics
updated 10.1 years ago by 15k • written 10.1 years ago by ▴ 150
0
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1
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3.1k
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Comment: C: Statistical question (Deseq, Cuffdis) when one condition is zero?
10.1 years ago by manekineko ▴ 150
0
votes
1
reply
3.5k
views
Comment: Comment: Strange mapping on miRNAs from RNA-seq library
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
0
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1
reply
3.5k
views
Comment: Comment: Strange mapping on miRNAs from RNA-seq library
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
0
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0
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3.5k
views
Comment: Comment: Strange mapping on miRNAs from RNA-seq library
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
0
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2
replies
3.5k
views
Comment: Comment: Strange mapping on miRNAs from RNA-seq library
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
0
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1
reply
3.5k
views
Comment: C: Strange mapping on miRNAs from RNA-seq library
10.1 years ago by manekineko ▴ 150
1
vote
13
replies
3.5k
views
Strange mapping on miRNAs from RNA-seq library
miRNA RNA-seq
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
3
votes
3
replies
2.6k
views
Cuffdiff results transcript testing
cuffdiff RNA-seq
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 150
99 results • Page 1 of 2
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