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GFF problem - gtf_to_fasta (Tophat) outputs only 2 sequences from 70 entries in GFF?
tophat
RNA-Seq
GFF
GTF
updated 4.4 years ago by
Biostar
20 • written 9.5 years ago by
manekineko
▴ 150
0
votes
1
reply
1.3k
views
Comment:
C: pathway or network from DEG list tool (plant)
4.4 years ago by
manekineko
▴ 150
0
votes
1
reply
1.3k
views
Comment:
C: pathway or network from DEG list tool (plant)
4.4 years ago by
manekineko
▴ 150
0
votes
5
replies
1.3k
views
pathway or network from DEG list tool (plant)
DEG
network
pathway
updated 4.4 years ago by
Leite
★ 1.3k • written 4.4 years ago by
manekineko
▴ 150
10
votes
12
replies
8.5k
views
8 follow
Qiime file for Krona pie chart?
qiime
krona
updated 4.8 years ago by
jeremieaauger
▴ 20 • written 8.6 years ago by
manekineko
▴ 150
0
votes
0
replies
1.8k
views
Comment:
C: Collapsing BAM based on seq and positions
4.8 years ago by
manekineko
▴ 150
0
votes
1
reply
1.8k
views
Comment:
C: Collapsing BAM based on seq and positions
4.8 years ago by
manekineko
▴ 150
0
votes
1
reply
1.8k
views
Comment:
A: Collapsing BAM based on seq and positions
4.8 years ago by
manekineko
▴ 150
2
votes
8
replies
1.8k
views
Collapsing BAM based on seq and positions
bam
collapse
4.8 years ago by
manekineko
▴ 150
0
votes
2
replies
7.7k
views
Comment:
A: Do you need a deduplication tool for FASTQ data in fastp?
4.9 years ago by
manekineko
▴ 150
0
votes
1
reply
5.1k
views
Comment:
C: Problems with STAR mapping output
updated 5.1 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
0
replies
4.6k
views
Comment:
C: htseq-count not working with miRbase gff?
updated 5.1 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
0
replies
1.7k
views
Comment:
C: miRNAs differential expression with no replicates
updated 5.1 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
1
reply
9.0k
views
Comment:
C: Mirna-Seq Trimming And Mapping?
updated 5.1 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
1
reply
9.0k
views
Comment:
C: Mirna-Seq Trimming And Mapping?
updated 5.1 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
1
reply
9.0k
views
Comment:
C: Mirna-Seq Trimming And Mapping?
updated 5.1 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
1
reply
9.0k
views
Answer:
A: Mirna-Seq Trimming And Mapping?
updated 5.1 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
18
votes
14
replies
6.7k
views
8 follow
Extending ends of sequences with the help of reads?
Assembly
updated 24 months ago by
Ram
44k • written 9.5 years ago by
manekineko
▴ 150
0
votes
0
replies
1.0k
views
qiime open vs closed picking with SILVA?
qiime
silva
5.3 years ago by
manekineko
▴ 150
0
votes
0
replies
2.2k
views
Comment:
C: Early Stage Researcher (with PhD option) - Bioinformatics (Marie-Curie Actions H
6.4 years ago by
manekineko
▴ 150
1
vote
1
reply
2.2k
views
Job:
Early Stage Researcher (with PhD option) - Bioinformatics (Marie-Curie Actions H2020)
MSc
marie-curie
PhD
updated 18 months ago by
Ram
44k • written 6.4 years ago by
manekineko
▴ 150
0
votes
1
reply
2.9k
views
RDP classifier pipeline question (16s analysis)
16s
updated 6.8 years ago by
gb
★ 2.2k • written 7.9 years ago by
manekineko
▴ 150
2
votes
7
replies
2.7k
views
LoFreq outputing no SNP?
LoFreq
updated 6.9 years ago by
Biostar
20 • written 7.0 years ago by
manekineko
▴ 150
0
votes
1
reply
2.7k
views
Comment:
C: LoFreq outputing no SNP?
7.0 years ago by
manekineko
▴ 150
0
votes
0
replies
2.7k
views
Comment:
C: LoFreq outputing no SNP?
7.0 years ago by
manekineko
▴ 150
0
votes
1
reply
2.7k
views
Comment:
C: LoFreq outputing no SNP?
7.0 years ago by
manekineko
▴ 150
0
votes
1
reply
1.3k
views
Comment:
C: Help downloading pepper genome (I have bad speed connection)
7.1 years ago by
manekineko
▴ 150
2
votes
3
replies
1.3k
views
Help downloading pepper genome (I have bad speed connection)
pepper
capsicum
genome
7.1 years ago by
manekineko
▴ 150
0
votes
1
reply
1.5k
views
16s analysis MySeq PE - analysis of only forward reads?
16s
metagenomics
updated 7.1 years ago by
Asaf
10k • written 7.1 years ago by
manekineko
▴ 150
0
votes
0
replies
2.1k
views
Comment:
C: Uncollapsing FASTA file
7.1 years ago by
manekineko
▴ 150
1
vote
9
replies
2.1k
views
Uncollapsing FASTA file
uncollapsing
updated 7.1 years ago by
cpad0112
21k • written 7.1 years ago by
manekineko
▴ 150
0
votes
0
replies
2.1k
views
Comment:
C: Uncollapsing FASTA file
7.1 years ago by
manekineko
▴ 150
0
votes
2
replies
2.1k
views
Comment:
C: Uncollapsing FASTA file
7.1 years ago by
manekineko
▴ 150
3
votes
7
replies
3.0k
views
Very slow Bio-linux on VirtualBox?
bio-linux
virtualbox
ova
updated 8.4 years ago by
Daniel
★ 4.0k • written 8.6 years ago by
manekineko
▴ 150
2
votes
1
reply
1.8k
views
Statistics and visualization software (STAMP similar) for general purposes?
stamp
statistics
visualization
updated 8.5 years ago by
Biostar
20 • written 8.6 years ago by
manekineko
▴ 150
0
votes
1
reply
3.0k
views
Edit BIOM file - delete samples, rearrange samples?
biom
updated 8.5 years ago by
fanli.gcb
▴ 730 • written 8.5 years ago by
manekineko
▴ 150
0
votes
0
replies
3.0k
views
Comment:
C: Very slow Bio-linux on VirtualBox?
8.6 years ago by
manekineko
▴ 150
0
votes
1
reply
3.2k
views
Comment:
C: 16s amplicon metagenomics - no mapping file?
8.6 years ago by
manekineko
▴ 150
1
vote
3
replies
3.2k
views
16s amplicon metagenomics - no mapping file?
mothur
qiime
updated 8.6 years ago by
agata88
▴ 870 • written 8.6 years ago by
manekineko
▴ 150
5
votes
9
replies
4.6k
views
htseq-count not working with miRbase gff?
htseq-count
mirbase
gff
updated 2.1 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
0
replies
2.9k
views
Comment:
Comment: Suggestions for small tools to add to Galaxy
updated 2.2 years ago by
Ram
44k • written 9.3 years ago by
manekineko
▴ 150
6
votes
4
replies
2.8k
views
Statistical question (Deseq, Cuffdis) when one condition is zero?
differential expression
statistics
updated 9.4 years ago by
dariober
15k • written 9.4 years ago by
manekineko
▴ 150
0
votes
1
reply
2.8k
views
Comment:
C: Statistical question (Deseq, Cuffdis) when one condition is zero?
9.4 years ago by
manekineko
▴ 150
0
votes
1
reply
2.9k
views
Comment:
Comment: Strange mapping on miRNAs from RNA-seq library
updated 2.2 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
1
reply
2.9k
views
Comment:
Comment: Strange mapping on miRNAs from RNA-seq library
updated 2.2 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
0
replies
2.9k
views
Comment:
Comment: Strange mapping on miRNAs from RNA-seq library
updated 2.2 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
2
replies
2.9k
views
Comment:
Comment: Strange mapping on miRNAs from RNA-seq library
updated 2.2 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
0
votes
1
reply
2.9k
views
Comment:
C: Strange mapping on miRNAs from RNA-seq library
9.4 years ago by
manekineko
▴ 150
1
vote
13
replies
2.9k
views
Strange mapping on miRNAs from RNA-seq library
miRNA
RNA-seq
updated 2.2 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
3
votes
3
replies
2.3k
views
Cuffdiff results transcript testing
cuffdiff
RNA-seq
updated 2.1 years ago by
Ram
44k • written 9.4 years ago by
manekineko
▴ 150
99 results • Page
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