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Comment: C: gene counts in Seurat after RunCCA() and AlignSubspace()
6.8 years ago by igor 13k
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4.3k
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Answer: A: gene counts in Seurat after RunCCA() and AlignSubspace()
6.8 years ago by igor 13k
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13k
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Answer: A: How can i control the cluster number in scRNASeq clustering by Seurat package
6.9 years ago by igor 13k
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0
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4.0k
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Answer: A: Suggested pipelines for finding somatic mutations using RNAseq in normal and tum
6.9 years ago by igor 13k
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1.4k
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Comment: C: costs for library preps
6.9 years ago by igor 13k
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1.3k
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Answer: A: Choice of ref. Genomes
6.9 years ago by igor 13k
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5.0k
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Answer: A: Interpretation of TCGA clinical data
6.9 years ago by igor 13k
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3.1k
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Comment: C: RNA-strandness of single cell library prep methods
6.9 years ago by igor 13k
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6.0k
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Comment: C: GATK: -nct and -nt
6.9 years ago by igor 13k
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2.0k
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Comment: C: Why is my features different between featurecounts and cuffnorm?
6.9 years ago by igor 13k
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2.0k
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Answer: A: Why is my features different between featurecounts and cuffnorm?
7.0 years ago by igor 13k
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1
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12k
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Comment: C: Analyzing digital gene expression data (DGE) from drop-seq pipeline with Seurat.
7.0 years ago by igor 13k
6
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3
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7.3k
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log vs square-root transformation
RNA-Seq normalization
updated 7.0 years ago by 20 • written 7.0 years ago by 13k
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12k
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Answer: A: Analyzing digital gene expression data (DGE) from drop-seq pipeline with Seurat.
7.0 years ago by igor 13k
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0
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13k
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Comment: C: Detecting copy number alterations based on RNA-seq data
7.0 years ago by igor 13k
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0
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13k
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Comment: C: scRNA-seq, SEURAT, NormalizeData, ScaleData, PCA, CCA ...
7.0 years ago by igor 13k
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0
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13k
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Comment: C: scRNA-seq, SEURAT, NormalizeData, ScaleData, PCA, CCA ...
7.0 years ago by igor 13k
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2.5k
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Answer: A: find out whether cell lines are verified
7.0 years ago by igor 13k
4
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3
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11k
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TCGA/GDC FPKM vs FPKM-UQ
gdc rna-seq
updated 7.0 years ago by ▴ 90 • written 8.7 years ago by 13k
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8.3k
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Comment: C: single sample somatic variant calling software
7.0 years ago by igor 13k
2
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1
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17k
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Answer: A: Seurat scRNAseq analysis: what is the mito gene list
7.0 years ago by igor 13k
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2.1k
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Comment: C: Posting a large interactive table online, supplementary to a publication?
7.0 years ago by igor 13k
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2
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2.3k
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overlap BED files, but account for region name
bed overlap bedtools
updated 7.0 years ago by 20 • written 8.4 years ago by 13k
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1
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3.5k
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Comment: C: Average Insert Size When Using Transcript Quantification Tools Such as Salmon?
7.1 years ago by igor 13k
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5.8k
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Comment: C: featureCounts in predicting strand specificity
7.1 years ago by igor 13k
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1
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13k
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Comment: C: cannot replicate the pheatmap scale function
7.1 years ago by igor 13k
2
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24k
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Answer: A: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
7.1 years ago by igor 13k
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0
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3.4k
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Comment: C: Trouble de-multiplexing single index paired-end illumina library
7.1 years ago by igor 13k
0
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1
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3.4k
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Comment: C: Trouble de-multiplexing single index paired-end illumina library
7.1 years ago by igor 13k
1
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0
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4.2k
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Answer: A: BSgenome.Hsapiens.UCSC.hg38 vs BSgenome.Hsapiens.NCBI.GRCh38
7.1 years ago by igor 13k
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1
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3.4k
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Comment: C: Trouble de-multiplexing single index paired-end illumina library
7.1 years ago by igor 13k
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41k
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Comment: C: How To Determine If Paired–End Illumina Rnaseq Reads Are Strand–Specific
7.1 years ago by igor 13k
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46k
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Comment: C: How to know that your RNA-seq is stranded or not?
7.1 years ago by igor 13k
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2.0k
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Comment: C: Using Bioconductor package for gene expression analysis
7.1 years ago by igor 13k
1
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1
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6.3k
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Comment: C: Finding Only Protein Coding Genes from Gencode GTF
7.1 years ago by igor 13k
3
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1
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6.3k
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Answer: A: Finding Only Protein Coding Genes from Gencode GTF
7.1 years ago by igor 13k
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0
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14k
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Comment: C: GSEA on single-cell cluster data
7.1 years ago by igor 13k
11
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2
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43k
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Answer: A: ATAC-seq peak calling with MACS
7.1 years ago by igor 13k
1
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1
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14k
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Answer: A: GSEA on single-cell cluster data
7.1 years ago by igor 13k
1
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0
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1.7k
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Answer: A: Is it possible to detect somatic SNVs from C57BL/6 tumor samples WXS without nor
7.1 years ago by igor 13k
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0
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14k
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Comment: C: RNA-seq rRNA contamination
7.1 years ago by igor 13k
13
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9
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14k
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6 follow
RNA-seq rRNA contamination
RNA-Seq rRNA
updated 7.1 years ago by 154k • written 9.2 years ago by 13k
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0
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14k
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Comment: C: RNA-seq rRNA contamination
7.1 years ago by igor 13k
2
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1
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2.1k
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Answer: A: Looking for chimp genome index (STAR)
7.1 years ago by igor 13k
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0
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2.1k
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Comment: C: Looking for chimp genome index (STAR)
7.1 years ago by igor 13k
1
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1
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6.4k
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Comment: C: Using GATK4 Mutect2 on mouse data, need a genome snp reference
7.1 years ago by igor 13k
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1
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6.4k
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Comment: C: Using GATK4 Mutect2 on mouse data, need a genome snp reference
7.2 years ago by igor 13k
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0
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3.7k
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Comment: C: Macs called peaks shorter than 1kb
7.2 years ago by igor 13k
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2
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3.6k
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Answer: A: Retrieve the sequence based on the start and end position in the cuffmerged.gtf
updated 7.2 years ago by 45k • written 9.7 years ago by 13k
1
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1
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12k
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Answer: A: MuTect2 VCF file
updated 7.2 years ago by 45k • written 9.7 years ago by 13k
1,531 results • Page 13 of 31
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